Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   DSM101856_RS06345 Genome accession   NZ_CP027639
Coordinates   1226519..1227169 (+) Length   216 a.a.
NCBI ID   WP_002842554.1    Uniprot ID   -
Organism   Campylobacter coli strain meC0280     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1221519..1232169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM101856_RS06325 (DSM101856_01274) - 1222375..1223829 (-) 1455 WP_193228017.1 MotA/TolQ/ExbB proton channel family protein -
  DSM101856_RS06330 (DSM101856_01275) fbaA 1223928..1224992 (-) 1065 WP_193228018.1 class II fructose-bisphosphate aldolase -
  DSM101856_RS06335 (DSM101856_01276) - 1224992..1225813 (-) 822 WP_002777551.1 peptidylprolyl isomerase -
  DSM101856_RS06340 (DSM101856_01277) nth 1225896..1226522 (+) 627 WP_002777553.1 endonuclease III -
  DSM101856_RS06345 (DSM101856_01278) CJE1441 1226519..1227169 (+) 651 WP_002842554.1 DNA/RNA non-specific endonuclease Regulator
  DSM101856_RS06350 (DSM101856_01279) - 1227179..1227811 (+) 633 WP_193228019.1 trimeric intracellular cation channel family protein -
  DSM101856_RS06355 (DSM101856_01280) - 1227890..1228108 (+) 219 WP_002780165.1 EexN family lipoprotein -
  DSM101856_RS06360 (DSM101856_01281) cmoA 1228112..1228816 (-) 705 WP_002780163.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  DSM101856_RS06365 (DSM101856_01282) - 1228820..1229656 (-) 837 WP_002780161.1 bifunctional riboflavin kinase/FAD synthetase -
  DSM101856_RS06370 (DSM101856_01283) - 1229625..1230374 (-) 750 WP_002777566.1 TlyA family RNA methyltransferase -
  DSM101856_RS06375 (DSM101856_01284) - 1230371..1231375 (-) 1005 WP_002780159.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25064.81 Da        Isoelectric Point: 9.8547

>NTDB_id=278592 DSM101856_RS06345 WP_002842554.1 1226519..1227169(+) (CJE1441) [Campylobacter coli strain meC0280]
MKLIIFLLAFTLHVFALEAYKPDKDFAPYFNPLNCSVVLDKFFYTNCYDYKLKGTKAVAYKVEASNLKEKQIKKRARFEV
DTNIPKKYRSTWSDYKNSGYTRGHIASNASFRFSKAAQTSVFLMSNITPQNAQVNATVWNEIEQRERSLAFKFQSVEVLN
LILYGKNPKFIKNGIAIPSSYVKIIKTSRFEECYEVPNNNIQSEEINDYKISCNKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=278592 DSM101856_RS06345 WP_002842554.1 1226519..1227169(+) (CJE1441) [Campylobacter coli strain meC0280]
ATGAAACTTATCATCTTTTTATTAGCATTTACACTTCATGTTTTTGCTTTAGAAGCTTATAAGCCCGATAAAGATTTTGC
GCCTTATTTTAATCCTTTAAATTGCTCTGTTGTTTTGGATAAATTTTTTTATACCAATTGTTATGATTATAAACTCAAAG
GCACTAAAGCCGTAGCCTATAAAGTCGAAGCGTCCAATCTAAAAGAAAAACAGATCAAAAAACGAGCTCGCTTTGAAGTT
GACACAAATATCCCTAAAAAATACCGCAGTACTTGGAGTGATTATAAAAATAGTGGTTATACCCGAGGACATATAGCCTC
AAATGCTTCTTTTCGCTTTAGTAAAGCAGCACAAACATCGGTTTTTTTGATGAGTAATATCACTCCACAAAATGCACAAG
TTAATGCAACGGTTTGGAATGAAATCGAACAAAGAGAAAGAAGTCTTGCTTTTAAATTCCAAAGCGTTGAAGTGCTAAAT
CTAATACTTTATGGTAAAAATCCTAAATTTATTAAAAATGGCATTGCTATACCGAGTTCTTATGTTAAGATTATCAAAAC
TTCTCGGTTTGAAGAATGTTATGAAGTACCCAATAACAATATCCAGAGCGAAGAAATCAATGATTATAAAATTTCTTGCA
ATAAATTCTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(35-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

65.99

91.204

0.602
  CJE0566 Campylobacter jejuni RM1221

65.482

91.204

0.597

Multiple sequence alignment