Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | DSM101856_RS05355 | Genome accession | NZ_CP027639 |
| Coordinates | 1032917..1033222 (+) | Length | 101 a.a. |
| NCBI ID | WP_002783353.1 | Uniprot ID | A0A401BKG4 |
| Organism | Campylobacter coli strain meC0280 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1027917..1038222
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSM101856_RS05330 (DSM101856_01072) | rpsR | 1028276..1028536 (+) | 261 | WP_002777087.1 | 30S ribosomal protein S18 | - |
| DSM101856_RS05335 (DSM101856_01073) | lon | 1028592..1030967 (-) | 2376 | WP_002783351.1 | endopeptidase La | - |
| DSM101856_RS05340 (DSM101856_01074) | bamD | 1030983..1031630 (-) | 648 | WP_002780248.1 | outer membrane protein assembly factor BamD | - |
| DSM101856_RS05345 (DSM101856_01075) | fliW | 1031794..1032183 (+) | 390 | WP_002777093.1 | flagellar assembly protein FliW | - |
| DSM101856_RS05350 (DSM101856_01076) | proC | 1032183..1032920 (+) | 738 | WP_002839216.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| DSM101856_RS05355 (DSM101856_01077) | ctsT | 1032917..1033222 (+) | 306 | WP_002783353.1 | hypothetical protein | Machinery gene |
| DSM101856_RS05360 (DSM101856_01078) | - | 1033215..1033883 (+) | 669 | WP_002790524.1 | hypothetical protein | - |
| DSM101856_RS05365 (DSM101856_01079) | - | 1033880..1034332 (+) | 453 | WP_002777117.1 | hypothetical protein | - |
| DSM101856_RS05370 (DSM101856_01080) | - | 1034325..1034954 (-) | 630 | WP_002783358.1 | uroporphyrinogen-III synthase | - |
| DSM101856_RS05375 (DSM101856_01081) | thiE | 1034932..1035564 (-) | 633 | WP_002783359.1 | thiamine phosphate synthase | - |
| DSM101856_RS05380 (DSM101856_01082) | thiD | 1035554..1036366 (-) | 813 | WP_193227999.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| DSM101856_RS05385 (DSM101856_01083) | - | 1036366..1037049 (-) | 684 | WP_002780240.1 | 3-methyladenine DNA glycosylase | - |
| DSM101856_RS05390 (DSM101856_01084) | - | 1037046..1037807 (-) | 762 | WP_025443303.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 12395.26 Da Isoelectric Point: 6.4746
>NTDB_id=278586 DSM101856_RS05355 WP_002783353.1 1032917..1033222(+) (ctsT) [Campylobacter coli strain meC0280]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTNPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTNPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
Nucleotide
Download Length: 306 bp
>NTDB_id=278586 DSM101856_RS05355 WP_002783353.1 1032917..1033222(+) (ctsT) [Campylobacter coli strain meC0280]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATCTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCA
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATCTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCA
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
50 |
97.03 |
0.485 |