Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DSM101856_RS02950 Genome accession   NZ_CP027639
Coordinates   581888..582658 (+) Length   256 a.a.
NCBI ID   WP_002818781.1    Uniprot ID   A0A622RR74
Organism   Campylobacter coli strain meC0280     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 576888..587658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM101856_RS02935 (DSM101856_00594) - 577785..579719 (-) 1935 WP_002842783.1 ribonuclease R family protein -
  DSM101856_RS02940 (DSM101856_00595) ilvC 579842..580864 (+) 1023 WP_002806714.1 ketol-acid reductoisomerase -
  DSM101856_RS02945 (DSM101856_00596) - 580867..581898 (+) 1032 WP_002820415.1 divergent polysaccharide deacetylase family protein -
  DSM101856_RS02950 (DSM101856_00597) dprA 581888..582658 (+) 771 WP_002818781.1 DNA-processing protein DprA Machinery gene
  DSM101856_RS02955 (DSM101856_00598) ruvX 582655..583035 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  DSM101856_RS02960 (DSM101856_00599) - 583025..583900 (+) 876 WP_002818784.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  DSM101856_RS02965 (DSM101856_00600) msrA 584123..584623 (-) 501 WP_002792204.1 peptide-methionine (S)-S-oxide reductase MsrA -
  DSM101856_RS02970 (DSM101856_00601) ppa 584671..585189 (-) 519 WP_002776378.1 inorganic diphosphatase -
  DSM101856_RS02975 (DSM101856_00602) - 585199..585774 (-) 576 WP_002781658.1 adenylate kinase -
  DSM101856_RS02980 (DSM101856_00603) aspS 585771..587522 (-) 1752 WP_193228138.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28817.22 Da        Isoelectric Point: 5.0727

>NTDB_id=278582 DSM101856_RS02950 WP_002818781.1 581888..582658(+) (dprA) [Campylobacter coli strain meC0280]
MQSEIPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=278582 DSM101856_RS02950 WP_002818781.1 581888..582658(+) (dprA) [Campylobacter coli strain meC0280]
ATGCAAAGTGAAATACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATTAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A622RR74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.581

96.875

0.461

Multiple sequence alignment