Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DSM104627_RS05570 Genome accession   NZ_CP027638
Coordinates   1108198..1108968 (-) Length   256 a.a.
NCBI ID   WP_002776372.1    Uniprot ID   A0A3H9IIK0
Organism   Campylobacter coli strain meC0467     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1103198..1113968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104627_RS05540 (DSM104627_01124) aspS 1103334..1105085 (+) 1752 WP_002822668.1 aspartate--tRNA ligase -
  DSM104627_RS05545 (DSM104627_01125) - 1105082..1105657 (+) 576 WP_002781658.1 adenylate kinase -
  DSM104627_RS05550 (DSM104627_01126) ppa 1105667..1106185 (+) 519 WP_002776378.1 inorganic diphosphatase -
  DSM104627_RS05555 (DSM104627_01127) msrA 1106233..1106733 (+) 501 WP_002792204.1 peptide-methionine (S)-S-oxide reductase MsrA -
  DSM104627_RS05560 (DSM104627_01128) - 1106956..1107831 (-) 876 WP_002818784.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  DSM104627_RS05565 (DSM104627_01129) ruvX 1107821..1108201 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  DSM104627_RS05570 (DSM104627_01130) dprA 1108198..1108968 (-) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  DSM104627_RS05575 (DSM104627_01131) - 1108958..1110010 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  DSM104627_RS05580 (DSM104627_01132) ilvC 1110013..1111035 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  DSM104627_RS05585 (DSM104627_01133) - 1111158..1113092 (+) 1935 WP_002844636.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28943.38 Da        Isoelectric Point: 5.2618

>NTDB_id=278575 DSM104627_RS05570 WP_002776372.1 1108198..1108968(-) (dprA) [Campylobacter coli strain meC0467]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPNTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYREKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=278575 DSM104627_RS05570 WP_002776372.1 1108198..1108968(-) (dprA) [Campylobacter coli strain meC0467]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAACACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATAGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3H9IIK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.5

93.75

0.445

Multiple sequence alignment