Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   DSM104627_RS01535 Genome accession   NZ_CP027638
Coordinates   307883..309301 (+) Length   472 a.a.
NCBI ID   WP_002833219.1    Uniprot ID   -
Organism   Campylobacter coli strain meC0467     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 302883..314301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104627_RS01520 (DSM104627_00306) - 303268..303906 (+) 639 WP_002784063.1 HAD family hydrolase -
  DSM104627_RS01525 (DSM104627_00307) nifJ 304010..307570 (+) 3561 WP_002790306.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  DSM104627_RS01530 (DSM104627_00308) ctsR 307594..307905 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  DSM104627_RS01535 (DSM104627_00309) ctsD 307883..309301 (+) 1419 WP_002833219.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  DSM104627_RS01540 (DSM104627_00310) ctsP 309294..309890 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  DSM104627_RS01545 (DSM104627_00311) - 309887..310483 (+) 597 WP_002779313.1 CDC27 family protein -
  DSM104627_RS01550 (DSM104627_00312) ctsE 310476..312038 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  DSM104627_RS01555 (DSM104627_00313) ctsF 312025..313200 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  DSM104627_RS01560 (DSM104627_00314) - 313197..313961 (-) 765 WP_002781157.1 TSUP family transporter -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53455.02 Da        Isoelectric Point: 6.7666

>NTDB_id=278558 DSM104627_RS01535 WP_002833219.1 307883..309301(+) (ctsD) [Campylobacter coli strain meC0467]
MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELASYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIF
KLFIEEQDLAYKFDGKILKISALQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNF
NIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFIITPSIVGNTHIPSLRELGFKYNE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=278558 DSM104627_RS01535 WP_002833219.1 307883..309301(+) (ctsD) [Campylobacter coli strain meC0467]
ATGATAAGATTAATATTTATTAAGATTCTATTTTTTACCAATCTTATTTATGCCATGGAATGCCAAAAACGCTTATTTGA
TATAAATATCAATGAAGATCTAAGCATAGAAGAAAGCCTAAAAGAACTTGCTAGTTATTGCTCTTTTAGCGTGGTAATTA
AAGATACAATTGCTAAGGAAAAACTAAAAGCCATTCAAAGCAGTATCAATATCCACCAAATGAGTTTAGATGAAATTTTT
AAACTTTTTATAGAAGAACAGGATCTAGCTTATAAATTTGATGGCAAGATTTTAAAAATTTCTGCTTTGCAAACTAGAAT
TTTTAAAATCAACTATATTACTTCAGTTAGAGAAGGACAAAGCATAACCAAGGCTTCGGTGGATTCTAAGCCAAGGCAAA
GTGAGTATTATAGCGCTTTTGAAGATAATGAAGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATA
GAAAAAGAGATTATGATTTTGCTTAGCTCCTCACATGAAAACTATGATATAAAAGCACCTATAGTCAATCCAAATGCTGG
GCTTGTTATCGTTACTGGAACGCATTCTCAGCTTCAACGCGTAAAAGCTTATTTACAAAAGCTTGAAAGTCGTCTTAAAA
AACAAGTTATTATAGATGTGAGTATACTTGCTGTAAATCTTAATAAAAATCATTCTAGTGGGATCAATTGGCAAAATTTC
AATATAGGATTAAATTCTCAAACGAGCGATAATACAAATTCTTTTATGCAAATACAAAATGGTCAAGGTTTTGTTAAAAA
TTTGGGTTTAAGAGCGAATTTGAATTTTGATTCCATTGTCAATTTTTTATCTCAAAGTGGAAAAACCAGTGTTTTATCTA
ATCCTAAATTAATGGCTTTAAACAATCAACAAGCCATTATTTCCATAGGCGATACTGTGAATTATCAAGTAAAAGAAAGC
TCTAAAGGTACTGAAAATGGCACAACTGTAAGTGAGAGTTATAGTAATTATTCTATTTTCATAGGAATTTTGCTTAATAT
TTTGCCCGAAATTTCTGATGATGGAAAAATCATGCTTAGGATCAATCCAAGTCTAAGCGACTTTAAATACCCAGAGGACA
ATAAAAGACAAAAAGAACCCCGCACTATCGCGCCTGATACAATTCAAAAAAAGCTTTCAAGTGTGGTGCAAGTAGAAAAT
AATCAAACTTTAATTTTGGGCGGACTTATCTCTCATAATCGCTCACAAAATGATAATTCTGTTAATTTTTTATCTAAAAT
TCCCATTTTGGGTTCTTTATTTAGAAGTGAAGATGAAAATTCCAATATCACAGAAATTGTTTTTATCATCACCCCAAGCA
TAGTAGGCAATACACATATACCTAGTCTTAGGGAGTTAGGATTTAAATACAATGAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(283-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

80.508

100

0.805

Multiple sequence alignment