Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   DSM104626_RS06215 Genome accession   NZ_CP027634
Coordinates   1191809..1192579 (-) Length   256 a.a.
NCBI ID   WP_002776372.1    Uniprot ID   A0A3H9IIK0
Organism   Campylobacter coli strain meC0281     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1186809..1197579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104626_RS06185 (DSM104626_01238) aspS 1186945..1188696 (+) 1752 WP_002784258.1 aspartate--tRNA ligase -
  DSM104626_RS06190 (DSM104626_01239) - 1188693..1189268 (+) 576 WP_002776379.1 adenylate kinase -
  DSM104626_RS06195 (DSM104626_01240) ppa 1189278..1189796 (+) 519 WP_002776378.1 inorganic diphosphatase -
  DSM104626_RS06200 (DSM104626_01241) msrA 1189844..1190344 (+) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  DSM104626_RS06205 (DSM104626_01242) - 1190567..1191442 (-) 876 WP_002776374.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  DSM104626_RS06210 (DSM104626_01243) ruvX 1191432..1191812 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  DSM104626_RS06215 (DSM104626_01244) dprA 1191809..1192579 (-) 771 WP_002776372.1 DNA-processing protein DprA Machinery gene
  DSM104626_RS06220 (DSM104626_01245) - 1192569..1193621 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  DSM104626_RS06225 (DSM104626_01246) ilvC 1193624..1194646 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  DSM104626_RS06230 (DSM104626_01247) - 1194769..1196703 (+) 1935 WP_002776352.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28943.38 Da        Isoelectric Point: 5.2618

>NTDB_id=278551 DSM104626_RS06215 WP_002776372.1 1191809..1192579(-) (dprA) [Campylobacter coli strain meC0281]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPNTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYREKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=278551 DSM104626_RS06215 WP_002776372.1 1191809..1192579(-) (dprA) [Campylobacter coli strain meC0281]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAACACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATAGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3H9IIK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.5

93.75

0.445

Multiple sequence alignment