Detailed information NTG0278509

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AM480_RS21345
• Genome accession: NZ_CP027611
• Coordinates: 1632921..1633781 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152284.1
• Uniprot ID: A0A3R9CN06
• Organism: Acinetobacter baumannii strain AR_0101
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1627921..1638781

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM480_RS07975 (AM480_07975)	-	1628851..1630122 (+)	1272	WP_000610365.1	tetratricopeptide repeat protein	-
AM480_RS07980 (AM480_07980)	-	1630199..1630525 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
AM480_RS07985 (AM480_07985)	rlmB	1630627..1631376 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
AM480_RS07990 (AM480_07990)	-	1631412..1632326 (+)	915	WP_000075011.1	DMT family transporter	-
AM480_RS07995 (AM480_07995)	coaE	1632323..1632919 (-)	597	WP_000874127.1	dephospho-CoA kinase	-
AM480_RS21345 (AM480_08000)	pilD	1632921..1633781 (-)	861	WP_001152284.1	prepilin peptidase	Machinery gene
AM480_RS08005 (AM480_08005)	pilC	1633781..1635007 (-)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
AM480_RS08010 (AM480_08010)	pilB	1635037..1636749 (-)	1713	WP_001274984.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AM480_RS08015 (AM480_08015)	tpiA	1637040..1637834 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
AM480_RS08020 (AM480_08020)	secG	1637847..1638176 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32189.64 Da
• Isoelectric Point: 7.5058

>NTDB_id=278509 AM480_RS21345 WP_001152284.1 1632921..1633781(-) (pilD) [Acinetobacter baumannii strain AR_0101]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQR
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVIMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=278509 AM480_RS21345 WP_001152284.1 1632921..1633781(-) (pilD) [Acinetobacter baumannii strain AR_0101]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCTATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACGG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATCCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCATCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A3R9CN06

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Acinetobacter baumannii D1279779	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.555	95.804	0.503
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437