Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AM480_RS15655 | Genome accession | NZ_CP027611 |
| Coordinates | 3180390..3180770 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain AR_0101 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3175390..3185770
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM480_RS15625 (AM480_15625) | kdsB | 3176293..3177054 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| AM480_RS15630 (AM480_15630) | - | 3177066..3178046 (+) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| AM480_RS15635 (AM480_15635) | - | 3178058..3178399 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| AM480_RS15640 (AM480_15640) | - | 3178417..3179190 (+) | 774 | WP_000497301.1 | TatD family hydrolase | - |
| AM480_RS15645 (AM480_15645) | - | 3179228..3179836 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| AM480_RS15650 (AM480_15650) | - | 3179846..3180400 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| AM480_RS15655 (AM480_15655) | xcpV | 3180390..3180770 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AM480_RS15660 (AM480_15660) | xcpW | 3180770..3181471 (+) | 702 | WP_000594590.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AM480_RS15665 (AM480_15665) | gspK | 3181471..3182430 (+) | 960 | WP_000301471.1 | type II secretion system minor pseudopilin GspK | - |
| AM480_RS15670 (AM480_15670) | - | 3182661..3183257 (+) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| AM480_RS15675 (AM480_15675) | ung | 3183308..3184021 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| AM480_RS15680 (AM480_15680) | - | 3184018..3185142 (+) | 1125 | WP_086241960.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AM480_RS15685 (AM480_15685) | tadA | 3185149..3185652 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=278506 AM480_RS15655 WP_000836911.1 3180390..3180770(+) (xcpV) [Acinetobacter baumannii strain AR_0101]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=278506 AM480_RS15655 WP_000836911.1 3180390..3180770(+) (xcpV) [Acinetobacter baumannii strain AR_0101]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |