Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GTNG_RS14610 Genome accession   NC_009328
Coordinates   2956736..2957233 (-) Length   165 a.a.
NCBI ID   WP_011888082.1    Uniprot ID   A4IS88
Organism   Geobacillus thermodenitrificans NG80-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2951736..2962233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTNG_RS18430 - 2952721..2952831 (+) 111 WP_081157681.1 YjcZ family sporulation protein -
  GTNG_RS14570 (GTNG_2839) - 2952828..2953235 (-) 408 WP_011888074.1 hypothetical protein -
  GTNG_RS14575 (GTNG_2840) - 2953510..2953872 (+) 363 WP_011888075.1 response regulator -
  GTNG_RS14580 (GTNG_2841) - 2954114..2954542 (-) 429 WP_011888076.1 helix-turn-helix domain-containing protein -
  GTNG_RS14585 (GTNG_2842) - 2954583..2955005 (-) 423 WP_011888077.1 hypothetical protein -
  GTNG_RS14590 (GTNG_2843) - 2955018..2955509 (-) 492 WP_008881975.1 hypothetical protein -
  GTNG_RS14595 (GTNG_2844) - 2955523..2956071 (-) 549 WP_011888079.1 dUTP diphosphatase -
  GTNG_RS14600 (GTNG_2845) - 2956090..2956272 (-) 183 WP_013144080.1 hypothetical protein -
  GTNG_RS19340 - 2956364..2956528 (-) 165 WP_236927483.1 hypothetical protein -
  GTNG_RS14610 (GTNG_2847) ssbA 2956736..2957233 (-) 498 WP_011888082.1 single-stranded DNA-binding protein Machinery gene
  GTNG_RS14615 (GTNG_2848) - 2957323..2957781 (-) 459 WP_011888083.1 HNH endonuclease -
  GTNG_RS14620 (GTNG_2849) - 2957778..2958206 (-) 429 WP_011888084.1 hypothetical protein -
  GTNG_RS14625 (GTNG_2850) - 2958211..2959458 (-) 1248 WP_011888085.1 replicative DNA helicase -
  GTNG_RS14630 (GTNG_2851) - 2959455..2959718 (-) 264 WP_008881985.1 replicative helicase loader/inhibitor -
  GTNG_RS14635 (GTNG_2852) - 2959734..2960579 (-) 846 WP_011888086.1 DnaD domain protein -
  GTNG_RS19050 (GTNG_2853) - 2960827..2960988 (-) 162 WP_008881988.1 hypothetical protein -
  GTNG_RS14645 (GTNG_2854) - 2960985..2961686 (-) 702 WP_011888087.1 ERF family protein -
  GTNG_RS14650 (GTNG_2855) - 2961683..2962159 (-) 477 WP_011888088.1 siphovirus Gp157 family protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18905.05 Da        Isoelectric Point: 6.4480

>NTDB_id=27819 GTNG_RS14610 WP_011888082.1 2956736..2957233(-) (ssbA) [Geobacillus thermodenitrificans NG80-2]
MINRVILTGRLTDDPQFRYTPSGVAVVTFTLAVTRPFANQNGVREADFIRCVAWRKQAENIANYLKKGSMVGIDGRLETG
SYERNGRRVYYTQVVVDTATFLEPRNASNSGRKQRGDRDTFEQEKNASRKAREAFMKPSEEQRWFDDPFADNGEPIEIND
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=27819 GTNG_RS14610 WP_011888082.1 2956736..2957233(-) (ssbA) [Geobacillus thermodenitrificans NG80-2]
ATGATTAACCGCGTCATTTTGACAGGACGGCTGACGGACGATCCGCAGTTTCGGTATACGCCAAGCGGAGTGGCTGTTGT
CACATTCACACTGGCCGTTACCCGTCCGTTTGCGAATCAAAACGGGGTGCGGGAAGCTGATTTTATTCGTTGCGTCGCAT
GGCGAAAACAGGCGGAGAACATCGCAAACTACTTGAAAAAAGGAAGCATGGTCGGGATCGACGGGCGATTGGAAACGGGT
AGCTATGAACGGAACGGACGGAGGGTTTATTATACACAGGTCGTGGTGGATACGGCAACATTTCTGGAGCCGCGCAACGC
TTCGAATTCGGGCAGGAAACAGAGAGGGGATAGGGACACATTCGAACAAGAGAAAAACGCCTCTAGGAAAGCGAGAGAAG
CGTTTATGAAGCCGTCAGAAGAGCAGAGATGGTTTGATGATCCTTTTGCTGATAACGGGGAGCCGATCGAAATAAACGAT
GACGATTTGCCGTTTTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.163

100

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

50.867

100

0.533

Multiple sequence alignment