Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   AM467_RS18095 Genome accession   NZ_CP027530
Coordinates   3755206..3755946 (-) Length   246 a.a.
NCBI ID   WP_106421657.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AR_0088     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3750206..3760946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM467_RS18075 (AM467_18075) aroB 3750748..3751830 (-) 1083 WP_001194249.1 3-dehydroquinate synthase -
  AM467_RS18080 (AM467_18080) aroK 3751859..3752428 (-) 570 WP_000643712.1 shikimate kinase AroK -
  AM467_RS18085 (AM467_18085) pilQ 3752440..3754605 (-) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  AM467_RS18090 (AM467_18090) pilP 3754668..3755195 (-) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  AM467_RS18095 (AM467_18095) pilO 3755206..3755946 (-) 741 WP_106421657.1 type 4a pilus biogenesis protein PilO Machinery gene
  AM467_RS18100 (AM467_18100) pilN 3755943..3756584 (-) 642 WP_000201221.1 PilN domain-containing protein Machinery gene
  AM467_RS18105 (AM467_18105) pilM 3756584..3757642 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  AM467_RS18110 (AM467_18110) ponA 3757804..3760359 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27785.57 Da        Isoelectric Point: 4.8357

>NTDB_id=277792 AM467_RS18095 WP_106421657.1 3755206..3755946(-) (pilO) [Acinetobacter baumannii strain AR_0088]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANINQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=277792 AM467_RS18095 WP_106421657.1 3755206..3755946(-) (pilO) [Acinetobacter baumannii strain AR_0088]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATATCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACTGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.008

98.374

0.679

Multiple sequence alignment