Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AM467_RS09005 | Genome accession | NZ_CP027530 |
| Coordinates | 1851045..1851425 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836910.1 | Uniprot ID | A0AAQ1AB09 |
| Organism | Acinetobacter baumannii strain AR_0088 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1846045..1856425
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM467_RS08975 (AM467_08975) | kdsB | 1846948..1847709 (+) | 762 | WP_000680701.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| AM467_RS08980 (AM467_08980) | - | 1847721..1848701 (+) | 981 | WP_001075418.1 | DNA polymerase III subunit delta' | - |
| AM467_RS08985 (AM467_08985) | - | 1848713..1849054 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| AM467_RS08990 (AM467_08990) | - | 1849072..1849845 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| AM467_RS08995 (AM467_08995) | - | 1849883..1850491 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| AM467_RS09000 (AM467_09000) | - | 1850501..1851055 (+) | 555 | WP_000841379.1 | type II secretion system protein | - |
| AM467_RS09005 (AM467_09005) | xcpV | 1851045..1851425 (+) | 381 | WP_000836910.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AM467_RS09010 (AM467_09010) | xcpW | 1851425..1852126 (+) | 702 | WP_000594572.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AM467_RS09015 (AM467_09015) | gspK | 1852126..1853085 (+) | 960 | WP_000301481.1 | type II secretion system minor pseudopilin GspK | - |
| AM467_RS09020 (AM467_09020) | - | 1853315..1853911 (+) | 597 | WP_000908451.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| AM467_RS09025 (AM467_09025) | ung | 1853962..1854675 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| AM467_RS09030 (AM467_09030) | - | 1854672..1855796 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AM467_RS09035 (AM467_09035) | tadA | 1855803..1856306 (+) | 504 | WP_000033177.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13957.17 Da Isoelectric Point: 9.8004
>NTDB_id=277772 AM467_RS09005 WP_000836910.1 1851045..1851425(+) (xcpV) [Acinetobacter baumannii strain AR_0088]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=277772 AM467_RS09005 WP_000836910.1 1851045..1851425(+) (xcpV) [Acinetobacter baumannii strain AR_0088]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |