Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   AM462_RS16980 Genome accession   NZ_CP027528
Coordinates   3459973..3460791 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AR_0083     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3454973..3465791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM462_RS16945 (AM462_16945) - 3455555..3455685 (-) 131 Protein_3289 hypothetical protein -
  AM462_RS16950 (AM462_16950) rpoZ 3455724..3456002 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  AM462_RS16955 (AM462_16955) gmk 3456075..3456704 (-) 630 WP_000015937.1 guanylate kinase -
  AM462_RS16960 (AM462_16960) ispH 3456827..3457777 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  AM462_RS16965 (AM462_16965) fimU 3457947..3458420 (+) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  AM462_RS16970 (AM462_16970) pilV 3458414..3458974 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  AM462_RS16975 (AM462_16975) pilW 3458975..3459976 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  AM462_RS16980 (AM462_16980) pilX 3459973..3460791 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  AM462_RS16985 (AM462_16985) pilY1 3460803..3464657 (+) 3855 WP_000768943.1 vWA domain-containing protein Machinery gene
  AM462_RS16990 (AM462_16990) pilY2 3464668..3465150 (+) 483 WP_001046489.1 type IV pilin protein Machinery gene
  AM462_RS16995 (AM462_16995) pilE 3465147..3465572 (+) 426 WP_000788336.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=277737 AM462_RS16980 WP_000149374.1 3459973..3460791(+) (pilX) [Acinetobacter baumannii strain AR_0083]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=277737 AM462_RS16980 WP_000149374.1 3459973..3460791(+) (pilX) [Acinetobacter baumannii strain AR_0083]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment