Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | AM462_RS05670 | Genome accession | NZ_CP027528 |
| Coordinates | 1160454..1160834 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836914.1 | Uniprot ID | A0A098SJS3 |
| Organism | Acinetobacter baumannii strain AR_0083 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1155454..1165834
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM462_RS05640 (AM462_05640) | tadA | 1155573..1156076 (-) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
| AM462_RS05645 (AM462_05645) | - | 1156083..1157207 (-) | 1125 | WP_003114973.1 | enoyl-CoA hydratase/isomerase family protein | - |
| AM462_RS05650 (AM462_05650) | ung | 1157204..1157917 (-) | 714 | WP_001177527.1 | uracil-DNA glycosylase | - |
| AM462_RS05655 (AM462_05655) | - | 1157968..1158564 (-) | 597 | WP_000908449.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| AM462_RS05660 (AM462_05660) | gspK | 1158794..1159753 (-) | 960 | WP_000301478.1 | type II secretion system minor pseudopilin GspK | - |
| AM462_RS05665 (AM462_05665) | xcpW | 1159753..1160454 (-) | 702 | WP_000594579.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| AM462_RS05670 (AM462_05670) | xcpV | 1160454..1160834 (-) | 381 | WP_000836914.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| AM462_RS05675 (AM462_05675) | - | 1160824..1161378 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| AM462_RS05680 (AM462_05680) | - | 1161388..1161996 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| AM462_RS05685 (AM462_05685) | - | 1162034..1162807 (-) | 774 | WP_000497300.1 | TatD family hydrolase | - |
| AM462_RS05690 (AM462_05690) | - | 1162825..1163166 (-) | 342 | WP_001183027.1 | PilZ domain-containing protein | - |
| AM462_RS05695 (AM462_05695) | - | 1163178..1164158 (-) | 981 | WP_001075416.1 | DNA polymerase III subunit delta' | - |
| AM462_RS05700 (AM462_05700) | kdsB | 1164170..1164931 (-) | 762 | WP_000680692.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 14074.34 Da Isoelectric Point: 10.0341
>NTDB_id=277705 AM462_RS05670 WP_000836914.1 1160454..1160834(-) (xcpV) [Acinetobacter baumannii strain AR_0083]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKRKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKRKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=277705 AM462_RS05670 WP_000836914.1 1160454..1160834(-) (xcpV) [Acinetobacter baumannii strain AR_0083]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATC
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGAG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATC
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGAG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |