Detailed information NTG0277704

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: AM462_RS05665
• Genome accession: NZ_CP027528
• Coordinates: 1159753..1160454 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594579.1
• Uniprot ID: A0A0D5YJA0
• Organism: Acinetobacter baumannii strain AR_0083
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1154753..1165454

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AM462_RS05635 (AM462_05635)	-	1155060..1155503 (-)	444	WP_001246675.1	SRPBCC family protein	-
AM462_RS05640 (AM462_05640)	tadA	1155573..1156076 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
AM462_RS05645 (AM462_05645)	-	1156083..1157207 (-)	1125	WP_003114973.1	enoyl-CoA hydratase/isomerase family protein	-
AM462_RS05650 (AM462_05650)	ung	1157204..1157917 (-)	714	WP_001177527.1	uracil-DNA glycosylase	-
AM462_RS05655 (AM462_05655)	-	1157968..1158564 (-)	597	WP_000908449.1	6-pyruvoyl trahydropterin synthase family protein	-
AM462_RS05660 (AM462_05660)	gspK	1158794..1159753 (-)	960	WP_000301478.1	type II secretion system minor pseudopilin GspK	-
AM462_RS05665 (AM462_05665)	xcpW	1159753..1160454 (-)	702	WP_000594579.1	type II secretion system minor pseudopilin GspJ	Machinery gene
AM462_RS05670 (AM462_05670)	xcpV	1160454..1160834 (-)	381	WP_000836914.1	type II secretion system minor pseudopilin GspI	Machinery gene
AM462_RS05675 (AM462_05675)	-	1160824..1161378 (-)	555	WP_000841373.1	type II secretion system protein	-
AM462_RS05680 (AM462_05680)	-	1161388..1161996 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
AM462_RS05685 (AM462_05685)	-	1162034..1162807 (-)	774	WP_000497300.1	TatD family hydrolase	-
AM462_RS05690 (AM462_05690)	-	1162825..1163166 (-)	342	WP_001183027.1	PilZ domain-containing protein	-
AM462_RS05695 (AM462_05695)	-	1163178..1164158 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
AM462_RS05700 (AM462_05700)	kdsB	1164170..1164931 (-)	762	WP_000680692.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26707.66 Da
• Isoelectric Point: 9.5501

>NTDB_id=277704 AM462_RS05665 WP_000594579.1 1159753..1160454(-) (xcpW) [Acinetobacter baumannii strain AR_0083]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLFKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=277704 AM462_RS05665 WP_000594579.1 1159753..1160454(-) (xcpW) [Acinetobacter baumannii strain AR_0083]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGTTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCGGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A0D5YJA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.283	100	0.983