Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdE   Type   Machinery gene
Locus tag   MMARC5_RS08825 Genome accession   NC_009135
Coordinates   1672724..1672948 (+) Length   74 a.a.
NCBI ID   WP_011869465.1    Uniprot ID   A4G0N5
Organism   Methanococcus maripaludis C5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1667724..1677948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMARC5_RS08785 (MmarC5_1716) - 1668525..1669193 (+) 669 WP_011869460.1 HisA/HisF family protein -
  MMARC5_RS08790 (MmarC5_1717) comE 1669195..1669752 (+) 558 WP_011869461.1 sulfopyruvate decarboxylase subunit beta -
  MMARC5_RS08795 (MmarC5_1718) - 1669764..1670447 (-) 684 WP_011869462.1 hypothetical protein -
  MMARC5_RS08800 (MmarC5_1719) - 1670458..1670664 (-) 207 WP_011171631.1 ferredoxin family protein -
  MMARC5_RS08805 (MmarC5_1720) - 1670681..1671682 (-) 1002 WP_011869463.1 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 -
  MMARC5_RS08810 - 1671703..1671900 (-) 198 WP_048058535.1 AtpZ/AtpI family protein -
  MMARC5_RS08820 (MmarC5_1721) MMJJ_RS05685 1672316..1672534 (+) 219 WP_011869464.1 class III signal peptide-containing protein Machinery gene
  MMARC5_RS08825 (MmarC5_1722) epdE 1672724..1672948 (+) 225 WP_011869465.1 class III signal peptide-containing protein Machinery gene
  MMARC5_RS08830 (MmarC5_1723) - 1672967..1673599 (+) 633 WP_011869466.1 metallophosphoesterase -
  MMARC5_RS08835 (MmarC5_1724) - 1673601..1674242 (-) 642 WP_011869467.1 hypothetical protein -
  MMARC5_RS08840 (MmarC5_1725) recJ 1674376..1675779 (+) 1404 WP_011869468.1 single-stranded-DNA-specific exonuclease RecJ -
  MMARC5_RS08845 (MmarC5_1726) - 1675813..1677099 (+) 1287 WP_011869469.1 phosphoadenosine phosphosulfate reductase family protein -

Sequence

Protein


Download         Length: 74 a.a.        Molecular weight: 7723.85 Da        Isoelectric Point: 8.4820

>NTDB_id=27742 MMARC5_RS08825 WP_011869465.1 1672724..1672948(+) (epdE) [Methanococcus maripaludis C5]
MKILEKLTSKKGQLSMEIGILVMAAVAVAAIAAYYYASNVSNSGKQITNSTNQTTQVLANAISSATAELSNITD

Nucleotide


Download         Length: 225 bp        

>NTDB_id=27742 MMARC5_RS08825 WP_011869465.1 1672724..1672948(+) (epdE) [Methanococcus maripaludis C5]
ATGAAAATTTTAGAAAAACTAACCTCCAAAAAAGGTCAATTATCCATGGAAATCGGCATTTTGGTAATGGCCGCAGTTGC
AGTTGCAGCAATTGCTGCGTATTATTATGCAAGCAATGTATCAAATAGTGGAAAACAGATTACGAATTCAACAAATCAGA
CTACTCAGGTTTTGGCTAATGCAATAAGTAGTGCTACTGCAGAATTATCTAATATCACAGATTAA

Domains

Predicted by InterproScan.

Class III signal peptide (Class_IIIsignal)

(10-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4G0N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdE Methanococcus maripaludis strain DSM 2067

82.857

94.595

0.784
  MMJJ_RS05685 Methanococcus maripaludis strain DSM 2067

64.384

98.649

0.635

Multiple sequence alignment