Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   CFK76_RS08840 Genome accession   NZ_CP032652
Coordinates   1748830..1749636 (-) Length   268 a.a.
NCBI ID   WP_016264363.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LZ217     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1743830..1754636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK76_RS08820 (CFK76_08820) add 1744532..1745557 (+) 1026 WP_035147601.1 adenosine deaminase -
  CFK76_RS08825 (CFK76_08825) - 1745614..1746273 (-) 660 WP_025016470.1 hypothetical protein -
  CFK76_RS08830 (CFK76_08830) rlmH 1746413..1746892 (-) 480 WP_011373797.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  CFK76_RS08835 (CFK76_08835) htrA 1747437..1748696 (-) 1260 WP_025016471.1 S1C family serine protease Regulator
  CFK76_RS08840 (CFK76_08840) vicX 1748830..1749636 (-) 807 WP_016264363.1 MBL fold metallo-hydrolase Regulator
  CFK76_RS08845 (CFK76_08845) - 1749671..1750492 (-) 822 WP_035147596.1 two-component system regulatory protein YycI -
  CFK76_RS08850 (CFK76_08850) - 1750497..1751828 (-) 1332 WP_035147594.1 YycH family regulatory protein -
  CFK76_RS08855 (CFK76_08855) walK 1751818..1753716 (-) 1899 WP_011373791.1 cell wall metabolism sensor histidine kinase WalK -
  CFK76_RS08860 (CFK76_08860) yycF 1753726..1754439 (-) 714 WP_011373790.1 response regulator YycF -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 29695.31 Da        Isoelectric Point: 5.0059

>NTDB_id=277227 CFK76_RS08840 WP_016264363.1 1748830..1749636(-) (vicX) [Latilactobacillus sakei strain LZ217]
MVEKDEMRVSVLASSSSGNTTFIETPTQKILVDAGMSGKRVQDLMHSIGRDLKDVDSLLVTHEHRDHSSGVGVLARRYGI
DVYANQPTWDAMASIIGTVPDEHKHVFEMGKTKTLGDIDVESYGVSHDAAAAQFYQFHHNNRAFAILTDTGYVSDQIRGT
IENADAYLVECNHDLEMLRMGKYPWSLKQRILSDTGHLSNEDGASALMAFMGQQTKRVFLGHLSQENNMKELAHLTVASI
LEQHDYGVGTDFEILDTDPAIADPLFVV

Nucleotide


Download         Length: 807 bp        

>NTDB_id=277227 CFK76_RS08840 WP_016264363.1 1748830..1749636(-) (vicX) [Latilactobacillus sakei strain LZ217]
ATGGTAGAAAAAGATGAAATGCGGGTTAGCGTCTTAGCCAGCAGTAGTTCAGGCAACACAACTTTTATTGAAACACCAAC
TCAAAAAATATTAGTCGACGCGGGAATGAGCGGTAAACGCGTTCAGGATTTAATGCACAGTATCGGTCGGGATTTAAAGG
ATGTTGACAGTCTACTAGTGACGCACGAACATCGCGATCACAGTAGTGGCGTGGGTGTTTTAGCCCGCCGGTATGGGATT
GATGTGTATGCTAACCAACCGACTTGGGATGCGATGGCGTCAATTATTGGGACCGTTCCTGATGAACATAAGCACGTCTT
TGAGATGGGTAAAACCAAAACACTCGGTGATATCGATGTTGAAAGTTATGGCGTTTCACACGATGCCGCTGCGGCGCAAT
TCTATCAATTTCATCATAATAACCGAGCCTTCGCAATCTTAACGGATACGGGTTACGTTTCGGATCAAATCAGAGGCACT
ATCGAAAATGCGGATGCCTACTTGGTGGAATGTAATCACGATTTGGAAATGTTACGAATGGGTAAGTACCCTTGGTCGCT
TAAACAACGTATTCTTAGTGATACGGGTCATCTATCTAACGAAGATGGGGCTTCAGCCTTAATGGCCTTTATGGGACAAC
AAACAAAGCGTGTTTTCCTAGGTCATTTGAGCCAAGAAAACAATATGAAGGAGTTGGCACACTTAACGGTGGCATCAATT
TTAGAACAACATGATTACGGTGTTGGCACGGATTTTGAAATTTTGGATACTGATCCAGCGATTGCGGACCCTTTATTTGT
TGTTTAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(17-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

59.459

96.642

0.575