Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CFK76_RS07465 Genome accession   NZ_CP032652
Coordinates   1434985..1435581 (-) Length   198 a.a.
NCBI ID   WP_011374047.1    Uniprot ID   Q38YT8
Organism   Latilactobacillus sakei strain LZ217     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1429985..1440581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK76_RS07430 (CFK76_07430) - 1430448..1431194 (-) 747 WP_035147289.1 acyl-[acyl-carrier-protein] thioesterase -
  CFK76_RS07435 (CFK76_07435) rsmI 1431205..1432083 (-) 879 WP_011374053.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  CFK76_RS07440 (CFK76_07440) - 1432182..1432535 (-) 354 WP_011374052.1 DNA replication initiation control protein YabA -
  CFK76_RS07445 (CFK76_07445) holB 1432587..1433579 (-) 993 WP_035147293.1 DNA polymerase III subunit delta' -
  CFK76_RS07450 (CFK76_07450) - 1433583..1433912 (-) 330 WP_011374050.1 cyclic-di-AMP receptor -
  CFK76_RS07455 (CFK76_07455) tmk 1433927..1434571 (-) 645 WP_016264620.1 dTMP kinase -
  CFK76_RS07460 (CFK76_07460) - 1434714..1434968 (-) 255 WP_011374048.1 YaaL family protein -
  CFK76_RS07465 (CFK76_07465) recR 1434985..1435581 (-) 597 WP_011374047.1 recombination mediator RecR Machinery gene
  CFK76_RS07470 (CFK76_07470) - 1435607..1435915 (-) 309 WP_016264619.1 YbaB/EbfC family nucleoid-associated protein -
  CFK76_RS07475 (CFK76_07475) dnaX 1435942..1437657 (-) 1716 WP_035147295.1 DNA polymerase III subunit gamma/tau -
  CFK76_RS07485 (CFK76_07485) tadA 1438082..1438567 (-) 486 WP_052039285.1 tRNA adenosine(34) deaminase TadA -
  CFK76_RS07490 (CFK76_07490) - 1438681..1439025 (-) 345 WP_016264616.1 hypothetical protein -
  CFK76_RS07495 (CFK76_07495) - 1439098..1439703 (-) 606 WP_085391630.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22051.38 Da        Isoelectric Point: 5.1115

>NTDB_id=277216 CFK76_RS07465 WP_011374047.1 1434985..1435581(-) (recR) [Latilactobacillus sakei strain LZ217]
MQYPEPIAKLIESYMKLPGIGNKTATRLAFYTIDMNEDDVTNFAKNLISARRDLHYCSVCGNITDEDPCEICRDTARSQE
MILVVEQPKDVMSMERMNDYHGLYHVLHGVLSPIEGKGPDDINIANLIKRLQKTPAKEVIIATNATPEGEATAMYISRLI
KPAGIKVTRLAHGLAVGSDIEYADEMTLLKAVEGRQEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=277216 CFK76_RS07465 WP_011374047.1 1434985..1435581(-) (recR) [Latilactobacillus sakei strain LZ217]
ATGCAATATCCAGAACCAATTGCGAAGCTAATCGAAAGTTATATGAAGTTACCAGGCATTGGTAACAAAACAGCAACGCG
ATTAGCTTTTTATACGATTGATATGAATGAAGATGACGTGACTAACTTTGCCAAGAATCTGATTTCAGCACGCCGAGACC
TCCATTATTGTAGTGTCTGTGGCAATATCACTGATGAAGATCCTTGTGAGATTTGTCGGGATACCGCGCGTAGTCAGGAA
ATGATTTTGGTGGTCGAACAACCTAAAGATGTGATGTCGATGGAACGGATGAACGATTATCACGGTCTCTATCACGTCTT
GCACGGGGTGTTGTCACCAATTGAAGGTAAAGGGCCAGACGATATTAATATTGCTAATTTAATTAAACGACTCCAAAAAA
CACCAGCTAAAGAAGTCATCATCGCCACCAATGCAACGCCCGAAGGGGAAGCAACGGCGATGTATATTTCACGGCTAATT
AAGCCGGCCGGGATTAAAGTCACTCGCTTAGCCCATGGTTTAGCGGTCGGGAGCGATATTGAATATGCGGATGAGATGAC
TTTATTAAAAGCAGTCGAGGGTCGTCAAGAAATCTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(40-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38YT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

66.667

100

0.667
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.98

100

0.48