Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CFK76_RS02040 Genome accession   NZ_CP032652
Coordinates   405772..406404 (+) Length   210 a.a.
NCBI ID   WP_016265428.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LZ217     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 400772..411404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK76_RS02015 (CFK76_02015) mltG 401068..402219 (+) 1152 WP_016265432.1 endolytic transglycosylase MltG -
  CFK76_RS02020 (CFK76_02020) udk 402298..402933 (+) 636 WP_025016019.1 uridine kinase -
  CFK76_RS02025 (CFK76_02025) greA 402955..403428 (+) 474 WP_011375067.1 transcription elongation factor GreA -
  CFK76_RS02030 (CFK76_02030) liaF 403951..404709 (+) 759 WP_016265430.1 cell wall-active antibiotics response protein LiaF -
  CFK76_RS02035 (CFK76_02035) - 404706..405770 (+) 1065 WP_016265429.1 sensor histidine kinase -
  CFK76_RS02040 (CFK76_02040) vraR 405772..406404 (+) 633 WP_016265428.1 response regulator Regulator
  CFK76_RS02045 (CFK76_02045) - 406430..406723 (+) 294 WP_011375063.1 HesB/YadR/YfhF family protein -
  CFK76_RS02050 (CFK76_02050) - 406849..407916 (+) 1068 WP_234057514.1 ABC transporter permease -
  CFK76_RS02055 (CFK76_02055) - 407918..408583 (+) 666 WP_016265426.1 ABC transporter ATP-binding protein -
  CFK76_RS02060 (CFK76_02060) - 408658..408876 (+) 219 WP_016265425.1 CsbD family protein -
  CFK76_RS02065 (CFK76_02065) - 408931..409926 (-) 996 WP_016265424.1 YhdH/YhfP family quinone oxidoreductase -
  CFK76_RS02070 (CFK76_02070) - 410082..411173 (+) 1092 WP_011375058.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23359.95 Da        Isoelectric Point: 4.7642

>NTDB_id=277161 CFK76_RS02040 WP_016265428.1 405772..406404(+) (vraR) [Latilactobacillus sakei strain LZ217]
MIKVLIVDDHEMVRLGISTYLGVQDDLEVVDQAVNGREGVEKALALRPDAILMDLVMPEMDGIEATKTILKAWPQAKIII
LTSFIDDEKVYPAIEAGAASYILKTSTAEEIANTIRKTTAGQSVLEPEVTNKMMNRMTHQAETKLYEDLTNREREVLGLI
AKGRSNQEIADELFITLKTVKTHVSNILAKLQVDDRTQAAIYAIKHQLAD

Nucleotide


Download         Length: 633 bp        

>NTDB_id=277161 CFK76_RS02040 WP_016265428.1 405772..406404(+) (vraR) [Latilactobacillus sakei strain LZ217]
GTGATAAAAGTATTGATTGTAGATGACCACGAGATGGTTCGATTGGGGATTTCAACTTATTTAGGGGTGCAAGACGATTT
AGAAGTGGTCGATCAAGCGGTTAATGGTCGTGAAGGTGTCGAAAAGGCATTGGCACTACGGCCAGATGCGATTTTAATGG
ATCTCGTCATGCCTGAAATGGATGGGATTGAAGCCACTAAGACGATTCTAAAGGCTTGGCCTCAAGCCAAGATTATTATT
CTAACCAGCTTTATTGATGATGAAAAAGTCTACCCAGCAATCGAAGCTGGTGCAGCAAGTTACATATTAAAAACGTCGAC
GGCCGAAGAGATTGCCAACACGATTCGGAAGACAACTGCGGGGCAATCAGTTTTAGAACCTGAAGTCACTAATAAGATGA
TGAATCGTATGACGCATCAGGCAGAAACAAAGTTATACGAAGATTTAACGAACCGTGAACGAGAAGTCCTAGGTTTGATT
GCCAAGGGTCGCAGTAATCAAGAAATTGCGGATGAATTATTCATTACACTTAAAACGGTTAAGACGCATGTTTCCAATAT
TTTAGCGAAGTTACAAGTCGACGATCGGACGCAGGCCGCAATTTATGCCATCAAGCACCAATTAGCGGATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

62.319

98.571

0.614
  degU Bacillus subtilis subsp. subtilis str. 168

36.53

100

0.381