Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C5H79_RS04285 Genome accession   NZ_CP027431
Coordinates   806823..807380 (-) Length   185 a.a.
NCBI ID   WP_002817940.1    Uniprot ID   -
Organism   Oenococcus oeni strain 19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 801823..812380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5H79_RS04265 (C5H79_04270) dnaB 802388..803845 (-) 1458 WP_002817943.1 replicative DNA helicase -
  C5H79_RS04270 (C5H79_04275) rplI 803851..804306 (-) 456 WP_002817489.1 50S ribosomal protein L9 -
  C5H79_RS04275 (C5H79_04280) - 804320..806377 (-) 2058 WP_002817942.1 DHH family phosphoesterase -
  C5H79_RS04280 (C5H79_04285) rpsR 806480..806800 (-) 321 WP_002817941.1 30S ribosomal protein S18 -
  C5H79_RS04285 (C5H79_04290) ssb 806823..807380 (-) 558 WP_002817940.1 single-stranded DNA-binding protein Machinery gene
  C5H79_RS04290 (C5H79_04295) rpsF 807389..807829 (-) 441 WP_002817809.1 30S ribosomal protein S6 -
  C5H79_RS04295 (C5H79_04300) - 807948..809414 (-) 1467 WP_002817939.1 multicopper oxidase domain-containing protein -
  C5H79_RS04300 (C5H79_04305) nadE 809645..810472 (+) 828 WP_002817938.1 ammonia-dependent NAD(+) synthetase -
  C5H79_RS09570 - 810523..810690 (-) 168 WP_002817936.1 hypothetical protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20219.82 Da        Isoelectric Point: 4.5093

>NTDB_id=277133 C5H79_RS04285 WP_002817940.1 806823..807380(-) (ssb) [Oenococcus oeni strain 19]
MINRVVLVGRLTRDVELRYTGNGDAVGSFTIAVERNFTNRAGEREADFISCVIWRKPAENFANFTGKGAMVGVEGRIQTR
TYDNNQGQKVYVTEVVVDNFQLLETRAQSEARRSQNGSAGNTGNTAPQSQSNFNIPNQQSNPFDSQFNNNASSASTNSQT
SSSSSPFNTDTGNDSLDISDDDLPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=277133 C5H79_RS04285 WP_002817940.1 806823..807380(-) (ssb) [Oenococcus oeni strain 19]
ATGATCAATCGAGTTGTATTAGTTGGTAGATTAACCCGCGACGTTGAGTTGCGTTATACAGGAAATGGTGATGCAGTTGG
ATCATTTACAATCGCTGTCGAACGAAATTTCACGAATCGCGCTGGTGAGCGCGAGGCTGATTTTATCAGTTGCGTGATTT
GGCGTAAACCTGCCGAAAACTTTGCCAATTTTACAGGTAAAGGAGCAATGGTTGGCGTCGAAGGCCGAATTCAGACCAGA
ACTTACGATAATAATCAGGGACAGAAGGTTTATGTGACCGAGGTTGTTGTTGATAATTTCCAATTATTGGAGACACGTGC
TCAATCTGAAGCGCGTCGTTCGCAAAATGGCAGTGCTGGTAACACGGGGAATACCGCTCCGCAAAGTCAGAGTAATTTCA
ATATTCCTAATCAACAGTCAAATCCATTTGATTCGCAATTCAACAATAATGCGAGTTCCGCTTCAACTAATAGTCAAACG
AGTTCTTCCAGCAGTCCTTTTAATACAGACACCGGGAATGATTCGCTTGATATCTCGGATGATGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.452

100

0.568
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.568

100

0.476

Multiple sequence alignment