Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   CFK78_RS09255 Genome accession   NZ_CP032633
Coordinates   1844060..1844734 (+) Length   224 a.a.
NCBI ID   WP_016265494.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain ZFM220     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1839060..1849734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFK78_RS09235 (CFK78_09235) - 1839394..1840134 (-) 741 WP_035145739.1 MBL fold metallo-hydrolase -
  CFK78_RS09240 (CFK78_09240) - 1840264..1841049 (-) 786 WP_016265492.1 DUF975 family protein -
  CFK78_RS09245 (CFK78_09245) - 1841067..1843166 (-) 2100 WP_061827276.1 ABC transporter permease -
  CFK78_RS09250 (CFK78_09250) - 1843144..1843920 (-) 777 WP_011375145.1 ABC transporter ATP-binding protein -
  CFK78_RS09255 (CFK78_09255) braR 1844060..1844734 (+) 675 WP_016265494.1 response regulator transcription factor Regulator
  CFK78_RS09260 (CFK78_09260) - 1844744..1845811 (+) 1068 WP_016265495.1 HAMP domain-containing histidine kinase -
  CFK78_RS09265 (CFK78_09265) - 1845921..1847087 (+) 1167 WP_035145749.1 hypothetical protein -
  CFK78_RS09270 (CFK78_09270) - 1847121..1848416 (-) 1296 WP_016265497.1 PTS sugar transporter subunit IIC -
  CFK78_RS09275 (CFK78_09275) nrdG 1848663..1849244 (-) 582 WP_016265498.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26000.98 Da        Isoelectric Point: 4.8372

>NTDB_id=276978 CFK78_RS09255 WP_016265494.1 1844060..1844734(+) (braR) [Latilactobacillus sakei strain ZFM220]
MFEIMIVEDDPTIANLIAENLEKWQLKAIIHDDFDTIFDRFLTDKPHLVLLDINLPVYDGFYWCRKIREVSKVPIIFISS
RSTNMDMVMSMNMGGDDFVNKPFSMEVLIAKINALLRRTYNYVDQNTDVIEHNGLLINLQSGGAQVGDTVVDLSKNEYKL
LQFLMRQHGQIVSREKLLRALWDDERFVDDNTLTVNINRLRKKIEQAGLEDYIQTKIGQGYIIP

Nucleotide


Download         Length: 675 bp        

>NTDB_id=276978 CFK78_RS09255 WP_016265494.1 1844060..1844734(+) (braR) [Latilactobacillus sakei strain ZFM220]
ATGTTTGAAATTATGATTGTTGAAGATGATCCTACAATTGCTAACTTGATTGCTGAGAACTTAGAGAAATGGCAGTTAAA
AGCCATTATCCACGATGATTTCGATACCATTTTTGACCGTTTTTTAACGGATAAACCCCACTTAGTCCTACTAGATATCA
ATTTACCCGTCTATGACGGTTTCTATTGGTGTCGTAAAATTCGTGAAGTGTCTAAAGTGCCAATTATCTTCATCTCTAGC
CGCAGTACTAATATGGATATGGTGATGTCAATGAACATGGGTGGCGATGATTTTGTTAACAAGCCCTTTTCAATGGAAGT
CTTAATCGCTAAAATCAATGCGCTTTTACGCCGGACCTATAACTATGTCGATCAAAATACAGACGTCATCGAACATAACG
GCCTTCTAATTAACTTACAAAGTGGTGGGGCTCAAGTTGGTGATACTGTCGTTGACCTCTCTAAAAATGAATATAAGTTA
CTCCAATTTTTGATGCGCCAACACGGTCAAATTGTCAGTCGTGAAAAACTCCTACGGGCGTTATGGGACGACGAACGTTT
TGTCGATGACAATACATTAACCGTCAATATCAATCGGCTGCGTAAAAAAATCGAACAAGCCGGTCTAGAAGACTATATTC
AAACTAAAATCGGCCAAGGCTACATCATCCCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

46.575

97.768

0.455
  vicR Streptococcus mutans UA159

34.914

100

0.362

Multiple sequence alignment