Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PA34_RS31365 Genome accession   NZ_CP032552
Coordinates   6532259..6532933 (-) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain PA34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6527259..6537933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PA34_RS31335 (PA34_031335) - 6527759..6529093 (+) 1335 WP_033990139.1 aspartate aminotransferase family protein -
  PA34_RS31340 (PA34_031340) - 6529159..6529521 (+) 363 WP_003096551.1 cupin domain-containing protein -
  PA34_RS31345 (PA34_031345) rpmG 6529658..6529813 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  PA34_RS31350 (PA34_031350) rpmB 6529825..6530061 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  PA34_RS31355 (PA34_031355) - 6530417..6531997 (+) 1581 WP_033990138.1 ABC transporter substrate-binding protein -
  PA34_RS31365 (PA34_031365) radC 6532259..6532933 (-) 675 WP_003096559.1 DNA repair protein RadC Machinery gene
  PA34_RS31370 (PA34_031370) coaBC 6533073..6534281 (+) 1209 WP_003114358.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  PA34_RS31375 (PA34_031375) dut 6534289..6534744 (+) 456 WP_003098293.1 dUTP diphosphatase -
  PA34_RS31380 (PA34_031380) - 6534781..6537378 (+) 2598 WP_010792971.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=276791 PA34_RS31365 WP_003096559.1 6532259..6532933(-) (radC) [Pseudomonas aeruginosa strain PA34]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=276791 PA34_RS31365 WP_003096559.1 6532259..6532933(-) (radC) [Pseudomonas aeruginosa strain PA34]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGTAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCTTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCCTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397