Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   D6022_RS16725 Genome accession   NZ_CP032538
Coordinates   3138805..3140808 (-) Length   667 a.a.
NCBI ID   WP_009328229.1    Uniprot ID   Q65J38
Organism   Bacillus licheniformis strain MT-B06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3133805..3145808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6022_RS16675 sspO 3134151..3134297 (+) 147 WP_003182252.1 small acid-soluble spore protein O -
  D6022_RS16680 - 3134339..3134485 (+) 147 WP_003182250.1 small acid-soluble spore protein P -
  D6022_RS16685 - 3134621..3135028 (+) 408 WP_017474790.1 Hsp20/alpha crystallin family protein -
  D6022_RS16690 - 3135233..3135661 (+) 429 WP_003182245.1 DUF2621 domain-containing protein -
  D6022_RS16695 - 3135697..3136191 (-) 495 WP_085959522.1 CcdC family protein -
  D6022_RS16700 pilH 3136265..3136636 (-) 372 WP_017474791.1 response regulator Machinery gene
  D6022_RS16705 - 3136718..3137425 (-) 708 WP_003182240.1 cytochrome c biogenesis protein CcdA -
  D6022_RS16710 - 3137668..3137829 (+) 162 WP_229107189.1 aspartyl-phosphate phosphatase Spo0E family protein -
  D6022_RS16715 - 3137910..3138128 (-) 219 WP_003182236.1 YneF family protein -
  D6022_RS16720 sirA 3138213..3138650 (-) 438 WP_003182234.1 sporulation inhibitor of replication protein SirA -
  D6022_RS16725 recP/tkt 3138805..3140808 (-) 2004 WP_009328229.1 transketolase Machinery gene
  D6022_RS16730 - 3140975..3141208 (-) 234 WP_003182231.1 DUF896 domain-containing protein -
  D6022_RS16735 - 3141274..3141921 (-) 648 WP_003182227.1 recombinase family protein -
  D6022_RS16740 yneA 3141940..3142251 (-) 312 WP_003182225.1 cell division suppressor protein YneA -
  D6022_RS16745 dinR/lexA 3142404..3143027 (+) 624 WP_003182222.1 transcriptional repressor LexA Regulator
  D6022_RS16750 nucA/comI 3143223..3143651 (-) 429 WP_003182220.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  D6022_RS16755 - 3144010..3144849 (-) 840 WP_003182218.1 thymidylate synthase -
  D6022_RS16760 - 3144909..3145670 (-) 762 WP_003182215.1 hypothetical protein -

Sequence

Protein


Download         Length: 667 a.a.        Molecular weight: 72636.78 Da        Isoelectric Point: 4.8350

>NTDB_id=276646 D6022_RS16725 WP_009328229.1 3138805..3140808(-) (recP/tkt) [Bacillus licheniformis strain MT-B06]
MKTIELKSVATIRTLSIDAIEKAKSGHPGMPMGTAPMAYALWTKMMNVSPENPNWFNRDRFVLSAGHGSMLLYSMLHLSG
YDVSIEDLKNFRQWGSKTPGHPEFGHTPGVDATTGPLGQGIGMAVGMALAERHLAETYNRDDYRVVDHYTYSICGDGDLM
EGISSEAASLAGHLNLGRLIVLYDSNDISLDGELNRSFSENVKQRFEAMNWEVLYVEDGNNIAEITAAIEKAKQNEKQPT
LIEVKTTIGFGSPNRAGTSGVHGAPLGSEEAKLTKEAYEWTYEEDFYVPSEVYEHFNETVKEAGKKKEAEWNELFSAYKK
AHPELAEELELAIKGELPEGWDQKVPVYEKGSSLASRASSGEVLNGIAQQVPFFFGGSADLAGSNKTTIKNGGDVSAKDY
AGRNIWFGVREFAMGAALNGMALHGGLRVFGGTFFVFSDYLRPAIRLAALMGLPVTYVFTHDSIAVGEDGPTHEPIEQLA
SLRALPNLSVIRPADGNETAAAWKLALQSKDQPTALVLTRQNLPTIDQSAETAYEGVKKGAYVVSKSQNEKPEAILLASG
SEVGLALDAQSELQKEGIDVSVVSVPSWDRFDKQPAEYKNAVLPTDVTKRLAIEMGSPLGWERYTGTDGDILGIDQFGAS
APGETIMKEYGFTPANVVDRVKKLLNR

Nucleotide


Download         Length: 2004 bp        

>NTDB_id=276646 D6022_RS16725 WP_009328229.1 3138805..3140808(-) (recP/tkt) [Bacillus licheniformis strain MT-B06]
ATGAAAACGATTGAATTAAAATCTGTCGCAACAATACGAACACTCTCCATAGACGCGATTGAAAAAGCTAAATCCGGTCA
CCCCGGCATGCCGATGGGGACTGCTCCGATGGCTTATGCGCTTTGGACAAAAATGATGAATGTCAGCCCTGAAAATCCGA
ATTGGTTTAACAGGGACCGTTTTGTGCTTTCCGCCGGACACGGATCAATGCTTTTGTACAGCATGCTTCACTTAAGCGGA
TATGACGTTTCAATTGAAGACCTCAAAAATTTCCGCCAATGGGGAAGCAAAACTCCTGGGCATCCGGAATTCGGACATAC
TCCGGGTGTAGATGCGACTACAGGTCCGCTTGGCCAAGGAATCGGAATGGCTGTCGGAATGGCGCTTGCTGAACGTCACC
TTGCTGAAACTTACAACCGTGACGACTATCGCGTCGTTGACCATTATACATACAGCATTTGCGGTGACGGAGACTTGATG
GAGGGAATTTCATCCGAAGCGGCTTCGCTTGCGGGACATTTGAACCTCGGCCGTCTCATCGTGCTTTATGATTCAAATGA
CATTTCGCTTGACGGCGAACTAAACCGCTCATTCTCTGAAAATGTAAAGCAGCGCTTTGAAGCGATGAATTGGGAAGTGC
TTTATGTTGAAGACGGCAACAACATTGCCGAAATTACGGCGGCCATCGAGAAAGCGAAACAAAATGAAAAGCAGCCGACA
TTAATTGAAGTGAAAACAACGATCGGTTTCGGTTCTCCAAACCGTGCGGGCACATCCGGCGTCCACGGCGCTCCGCTCGG
ATCAGAAGAGGCGAAATTAACGAAGGAAGCGTATGAGTGGACATACGAAGAAGATTTTTATGTTCCTTCCGAAGTGTACG
AGCACTTTAACGAAACAGTGAAGGAAGCGGGTAAGAAAAAAGAGGCGGAATGGAACGAACTGTTCTCCGCATACAAGAAA
GCCCACCCGGAACTTGCCGAAGAGCTTGAACTGGCGATCAAAGGCGAGCTTCCTGAAGGATGGGATCAGAAAGTACCTGT
ATATGAAAAAGGAAGCAGCCTTGCTTCACGTGCATCCTCAGGTGAAGTGTTAAACGGAATCGCTCAACAAGTGCCGTTTT
TCTTTGGCGGATCCGCGGACTTGGCCGGTTCCAACAAAACGACAATCAAAAACGGCGGAGATGTTTCAGCGAAGGATTAC
GCCGGCAGAAATATCTGGTTCGGTGTAAGGGAATTTGCGATGGGAGCAGCTTTGAACGGAATGGCTCTTCACGGAGGCCT
CCGCGTATTCGGCGGAACGTTCTTCGTTTTCTCCGATTACTTGAGACCAGCGATTCGTCTTGCTGCATTGATGGGGCTTC
CTGTCACCTATGTATTTACACATGACAGCATTGCCGTCGGTGAAGACGGACCGACTCATGAGCCGATTGAACAGCTGGCA
TCACTTCGTGCGCTGCCGAACTTGTCCGTCATCAGACCTGCCGACGGAAATGAAACAGCAGCTGCCTGGAAGCTCGCGCT
TCAATCAAAAGACCAGCCGACTGCGCTTGTGTTGACACGCCAAAACTTGCCGACAATCGATCAGTCTGCTGAAACGGCTT
ATGAAGGCGTTAAAAAGGGTGCATATGTCGTTTCAAAAAGCCAAAACGAAAAACCGGAAGCGATCTTGCTTGCGAGCGGA
TCTGAAGTTGGCCTTGCGCTTGATGCACAAAGCGAGCTGCAAAAAGAAGGCATTGACGTATCCGTTGTCAGCGTTCCGTC
ATGGGATCGATTTGACAAGCAGCCGGCTGAATATAAAAACGCTGTTCTTCCAACTGATGTGACAAAGCGTCTCGCAATTG
AAATGGGATCGCCGCTCGGATGGGAGAGATATACAGGCACTGACGGGGACATTCTCGGAATCGACCAGTTCGGTGCATCA
GCTCCTGGCGAAACGATCATGAAAGAATACGGTTTTACGCCTGCGAATGTAGTTGACCGGGTGAAAAAACTGTTAAATCG
CTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(548-657)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-338)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65J38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

57.768

99.4

0.574