Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | C6I29_RS05950 | Genome accession | NZ_CP027365 |
| Coordinates | 1279887..1280273 (+) | Length | 128 a.a. |
| NCBI ID | WP_005025576.1 | Uniprot ID | A0A062BTN5 |
| Organism | Acinetobacter radioresistens strain DSSKY-A-001 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1274887..1285273
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C6I29_RS05920 | kdsB | 1275732..1276493 (+) | 762 | WP_005025565.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| C6I29_RS05925 | - | 1276511..1277494 (+) | 984 | WP_005025569.1 | DNA polymerase III subunit delta' C-terminal domain-containing protein | - |
| C6I29_RS05930 | - | 1277513..1277854 (+) | 342 | WP_005014707.1 | PilZ domain-containing protein | - |
| C6I29_RS05935 | - | 1277898..1278671 (+) | 774 | WP_005025571.1 | TatD family hydrolase | - |
| C6I29_RS05940 | - | 1278711..1279319 (+) | 609 | WP_005025573.1 | TetR/AcrR family transcriptional regulator | - |
| C6I29_RS05945 | - | 1279334..1279897 (+) | 564 | WP_005025574.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| C6I29_RS05950 | xcpV | 1279887..1280273 (+) | 387 | WP_005025576.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| C6I29_RS05955 | xcpW | 1280270..1280905 (+) | 636 | WP_005025578.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| C6I29_RS05960 | gspK | 1280928..1281872 (+) | 945 | WP_005025579.1 | type II secretion system minor pseudopilin GspK | - |
| C6I29_RS05965 | - | 1281969..1282565 (+) | 597 | WP_005025581.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| C6I29_RS05970 | ung | 1282610..1283323 (+) | 714 | WP_005025584.1 | uracil-DNA glycosylase | - |
| C6I29_RS05975 | - | 1283320..1284444 (+) | 1125 | WP_005025586.1 | enoyl-CoA hydratase/isomerase family protein | - |
| C6I29_RS05980 | tadA | 1284448..1284939 (+) | 492 | WP_005014690.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 128 a.a. Molecular weight: 14078.22 Da Isoelectric Point: 7.0119
>NTDB_id=276605 C6I29_RS05950 WP_005025576.1 1279887..1280273(+) (xcpV) [Acinetobacter radioresistens strain DSSKY-A-001]
MKPKGFTLLEVMVALAIFATAAVALTKVAMQYTQATSNAILRTKAQFVGMNEIALMEMNQAWLQGTESKQVTSQGETWQI
DKQAASTISPNVQRIEVQISLFNTEQGKVENGIATLVFFNHPLKENTS
MKPKGFTLLEVMVALAIFATAAVALTKVAMQYTQATSNAILRTKAQFVGMNEIALMEMNQAWLQGTESKQVTSQGETWQI
DKQAASTISPNVQRIEVQISLFNTEQGKVENGIATLVFFNHPLKENTS
Nucleotide
Download Length: 387 bp
>NTDB_id=276605 C6I29_RS05950 WP_005025576.1 1279887..1280273(+) (xcpV) [Acinetobacter radioresistens strain DSSKY-A-001]
GTGAAACCTAAAGGCTTTACATTACTTGAAGTTATGGTTGCGCTAGCAATTTTTGCGACAGCAGCAGTTGCCCTGACAAA
AGTAGCCATGCAATATACACAAGCCACCTCAAATGCAATTTTAAGGACAAAAGCGCAATTTGTAGGTATGAATGAAATTG
CTCTCATGGAAATGAATCAGGCGTGGTTACAGGGAACAGAGTCTAAACAGGTAACATCTCAAGGTGAAACCTGGCAAATT
GACAAACAGGCAGCTTCCACCATCAGTCCAAATGTACAGCGTATTGAAGTACAAATTAGTCTGTTTAATACAGAGCAGGG
TAAGGTTGAAAATGGAATTGCGACCTTGGTGTTTTTTAATCATCCACTCAAAGAAAATACTTCATGA
GTGAAACCTAAAGGCTTTACATTACTTGAAGTTATGGTTGCGCTAGCAATTTTTGCGACAGCAGCAGTTGCCCTGACAAA
AGTAGCCATGCAATATACACAAGCCACCTCAAATGCAATTTTAAGGACAAAAGCGCAATTTGTAGGTATGAATGAAATTG
CTCTCATGGAAATGAATCAGGCGTGGTTACAGGGAACAGAGTCTAAACAGGTAACATCTCAAGGTGAAACCTGGCAAATT
GACAAACAGGCAGCTTCCACCATCAGTCCAAATGTACAGCGTATTGAAGTACAAATTAGTCTGTTTAATACAGAGCAGGG
TAAGGTTGAAAATGGAATTGCGACCTTGGTGTTTTTTAATCATCCACTCAAAGAAAATACTTCATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
79.032 |
96.875 |
0.766 |