Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   C6I29_RS05955 Genome accession   NZ_CP027365
Coordinates   1280270..1280905 (+) Length   211 a.a.
NCBI ID   WP_005025578.1    Uniprot ID   A0A062BXX8
Organism   Acinetobacter radioresistens strain DSSKY-A-001     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1275270..1285905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6I29_RS05920 kdsB 1275732..1276493 (+) 762 WP_005025565.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C6I29_RS05925 - 1276511..1277494 (+) 984 WP_005025569.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  C6I29_RS05930 - 1277513..1277854 (+) 342 WP_005014707.1 PilZ domain-containing protein -
  C6I29_RS05935 - 1277898..1278671 (+) 774 WP_005025571.1 TatD family hydrolase -
  C6I29_RS05940 - 1278711..1279319 (+) 609 WP_005025573.1 TetR/AcrR family transcriptional regulator -
  C6I29_RS05945 - 1279334..1279897 (+) 564 WP_005025574.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  C6I29_RS05950 xcpV 1279887..1280273 (+) 387 WP_005025576.1 type II secretion system minor pseudopilin GspI Machinery gene
  C6I29_RS05955 xcpW 1280270..1280905 (+) 636 WP_005025578.1 type II secretion system minor pseudopilin GspJ Machinery gene
  C6I29_RS05960 gspK 1280928..1281872 (+) 945 WP_005025579.1 type II secretion system minor pseudopilin GspK -
  C6I29_RS05965 - 1281969..1282565 (+) 597 WP_005025581.1 6-pyruvoyl trahydropterin synthase family protein -
  C6I29_RS05970 ung 1282610..1283323 (+) 714 WP_005025584.1 uracil-DNA glycosylase -
  C6I29_RS05975 - 1283320..1284444 (+) 1125 WP_005025586.1 enoyl-CoA hydratase/isomerase family protein -
  C6I29_RS05980 tadA 1284448..1284939 (+) 492 WP_005014690.1 tRNA adenosine(34) deaminase TadA -
  C6I29_RS05985 - 1285022..1285456 (+) 435 WP_005014689.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24116.49 Da        Isoelectric Point: 5.3446

>NTDB_id=276606 C6I29_RS05955 WP_005025578.1 1280270..1280905(+) (xcpW) [Acinetobacter radioresistens strain DSSKY-A-001]
MKYKWGFTLVELLVAIAIFAALSALGWKVFDYLIKVKERNSIHEQNLARLQEAYQQILRDSLQLIPLTANNGGELRPALE
LNDQHFIFSKAGVTDPLGQGLGPYERIEYQYSSADQKLYRLKYQNLNTSTAIQPQSSVLLDQVEQYRISVLNPAELNRWP
EGVLDPASQSEQLKILPRGFKINLTINGTEYEWIYSLLNTDDLKEKTINPS

Nucleotide


Download         Length: 636 bp        

>NTDB_id=276606 C6I29_RS05955 WP_005025578.1 1280270..1280905(+) (xcpW) [Acinetobacter radioresistens strain DSSKY-A-001]
ATGAAATATAAATGGGGTTTTACTCTTGTGGAGCTGTTGGTCGCAATTGCGATTTTTGCAGCACTCTCTGCGCTGGGTTG
GAAGGTTTTTGATTATCTGATCAAAGTAAAAGAACGAAATAGTATACATGAGCAAAATCTTGCCCGGTTACAGGAAGCTT
ATCAGCAAATCTTACGTGACAGCCTGCAACTGATTCCATTAACTGCAAATAATGGAGGAGAGTTGCGTCCTGCACTTGAA
TTAAACGATCAGCATTTTATTTTTAGTAAAGCTGGTGTAACTGATCCTTTGGGCCAAGGGCTGGGGCCTTATGAGCGGAT
CGAATATCAATACAGTAGTGCAGATCAGAAACTGTACCGGTTAAAATATCAAAACCTGAATACTTCAACTGCTATTCAGC
CCCAGTCAAGTGTGCTTCTTGATCAGGTCGAGCAATACCGGATTAGCGTCTTAAATCCGGCTGAACTGAACAGATGGCCT
GAAGGCGTATTAGATCCTGCTTCCCAATCAGAACAGCTTAAAATTCTACCGCGCGGTTTTAAAATCAATCTGACCATAAA
TGGAACTGAATACGAATGGATTTACAGCCTTTTAAATACAGATGATTTAAAAGAAAAAACAATAAATCCATCTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(59-190)

Prokaryotic N-terminal methylation motif (N_methyl)

(6-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BXX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

65.657

93.839

0.616

Multiple sequence alignment