Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   BURPS1106A_RS02535 Genome accession   NC_009076
Coordinates   548343..549662 (-) Length   439 a.a.
NCBI ID   WP_004526057.1    Uniprot ID   A0AAX0UF52
Organism   Burkholderia pseudomallei 1106a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 543343..554662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BURPS1106A_RS02515 (BURPS1106A_0572) - 544242..544637 (-) 396 WP_004530943.1 nitrite reductase (NAD(P)H) small subunit -
  BURPS1106A_RS02520 (BURPS1106A_0573) nirB 544713..547157 (-) 2445 WP_004536067.1 nitrite reductase large subunit NirB -
  BURPS1106A_RS30685 (BURPS1106A_0574) - 547204..547545 (+) 342 WP_009918580.1 hypothetical protein -
  BURPS1106A_RS02530 (BURPS1106A_0575) maiA 547542..548186 (+) 645 WP_004534329.1 maleylacetoacetate isomerase -
  BURPS1106A_RS02535 (BURPS1106A_0576) pilA 548343..549662 (-) 1320 WP_004526057.1 signal recognition particle-docking protein FtsY Machinery gene
  BURPS1106A_RS02540 (BURPS1106A_0579) rsmD 549914..550540 (+) 627 WP_004522861.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  BURPS1106A_RS02545 (BURPS1106A_0580) coaD 550651..551151 (+) 501 WP_004195249.1 pantetheine-phosphate adenylyltransferase -
  BURPS1106A_RS02550 (BURPS1106A_0581) - 551214..551480 (+) 267 WP_004195247.1 YfhL family 4Fe-4S dicluster ferredoxin -
  BURPS1106A_RS02555 (BURPS1106A_0582) hisC 551659..552729 (-) 1071 WP_004553797.1 histidinol-phosphate transaminase -
  BURPS1106A_RS02560 (BURPS1106A_0583) pth 552818..553423 (-) 606 WP_004202941.1 aminoacyl-tRNA hydrolase -
  BURPS1106A_RS02565 (BURPS1106A_0584) - 553537..554151 (-) 615 WP_004200150.1 50S ribosomal protein L25/general stress protein Ctc -

Sequence

Protein


Download         Length: 439 a.a.        Molecular weight: 46370.66 Da        Isoelectric Point: 6.0726

>NTDB_id=27653 BURPS1106A_RS02535 WP_004526057.1 548343..549662(-) (pilA) [Burkholderia pseudomallei 1106a]
MFSFFKRFKKAPDAAPAEPQQAPDAPRDASRAPASPDAARVDAPAAPQPRDERSENHDRPEHDETPTAEHSRSGAQPAAR
ATPPASAAASEAPVGQPRAAAARASEPAPSVVMTVTPSSNGRHGVVETVEIVPPPAPEPAAKKSWIARLKSGLAKTSSSI
TNVFVNTKIDDALYEELETALLMSDAGIDATEHLLDALREKVRAGRLTDPQQVKDALRGLLVELLAPLEKSLVLGRAQPL
VMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIWGERNNVTVVQQESGDPAAVIFDAVSAARARN
IDVMMADTAGRLPTQLHLMEELRKVKRVIGKAHDGAPHEVLLVIDANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGG
ILAAIARQRPIPVYFIGIGEKVEDLQPFSAEEFADALLG

Nucleotide


Download         Length: 1320 bp        

>NTDB_id=27653 BURPS1106A_RS02535 WP_004526057.1 548343..549662(-) (pilA) [Burkholderia pseudomallei 1106a]
ATGTTCAGTTTCTTCAAACGATTCAAGAAAGCGCCCGATGCCGCCCCGGCCGAGCCGCAGCAAGCGCCCGACGCGCCGCG
GGACGCTTCCCGCGCACCGGCATCGCCCGACGCCGCGCGAGTCGACGCGCCGGCCGCGCCGCAGCCGCGCGACGAGCGCA
GCGAAAACCACGATCGCCCCGAGCACGACGAAACGCCGACCGCCGAGCATTCCCGTTCCGGCGCGCAGCCCGCCGCGCGC
GCGACGCCGCCCGCGTCCGCCGCCGCGTCGGAAGCGCCGGTCGGGCAGCCGCGCGCCGCCGCCGCGCGCGCAAGCGAGCC
CGCGCCGTCGGTCGTGATGACGGTCACGCCGTCGTCGAACGGCCGCCACGGCGTCGTCGAGACGGTCGAGATCGTGCCGC
CGCCCGCGCCCGAGCCGGCCGCGAAGAAATCGTGGATCGCGCGGCTGAAGTCCGGCCTCGCGAAGACGAGCTCGAGCATC
ACGAACGTATTCGTCAACACGAAAATCGACGACGCGCTCTACGAGGAGCTCGAGACGGCGCTGCTGATGTCCGACGCCGG
CATCGACGCGACCGAGCATCTGCTCGACGCGCTGCGCGAAAAGGTGCGCGCGGGCCGCCTCACCGATCCGCAGCAGGTGA
AGGATGCGCTGCGCGGGCTGCTCGTCGAGCTGCTGGCGCCGCTCGAGAAGTCGCTCGTGCTCGGCCGCGCGCAGCCGCTC
GTGATGATGATCGCGGGCGTGAACGGCGCCGGCAAGACGACGAGCATCGGCAAGCTCGCGAAGCATCTGCAGAGCTTCGA
TCAATCGGTGCTGCTCGCCGCGGGCGACACGTTTCGCGCCGCCGCGCGCGAGCAGCTCGCGATCTGGGGCGAACGCAACA
ACGTGACCGTCGTCCAGCAGGAAAGCGGCGACCCCGCCGCGGTGATCTTCGATGCGGTCAGCGCCGCGCGCGCGCGCAAC
ATCGACGTGATGATGGCCGACACCGCAGGCCGCCTGCCGACGCAGCTGCATCTGATGGAAGAGCTCCGGAAGGTGAAGCG
CGTGATCGGCAAGGCGCACGACGGCGCGCCGCACGAGGTGCTGCTCGTGATCGACGCGAACACCGGCCAGAACGCGCTCG
CGCAGGTAAAGGCGTTCGACGACGCGCTCGGCCTCACGGGCCTCATCGTCACGAAGCTCGACGGCACCGCGAAGGGCGGC
ATCCTCGCCGCGATCGCGCGCCAGCGGCCGATTCCGGTGTACTTCATCGGCATCGGCGAGAAGGTCGAGGATCTGCAGCC
GTTCAGCGCGGAGGAATTCGCGGACGCGCTGCTCGGCTAG

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(158-218)

SRP54-type protein, GTPase domain (SRP54)

(240-439)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50.113

100

0.506

Multiple sequence alignment