Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D6I99_RS05190 Genome accession   NZ_CP032522
Coordinates   992163..992714 (+) Length   183 a.a.
NCBI ID   WP_002853013.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BC     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 987163..997714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6I99_RS05150 - 987353..987778 (+) 426 WP_002890069.1 GNAT family N-acetyltransferase -
  D6I99_RS08515 - 987842..988462 (+) 621 Protein_995 NAD(P)H-dependent oxidoreductase -
  D6I99_RS05165 - 988462..989067 (+) 606 WP_002864275.1 NAD(P)H-dependent oxidoreductase -
  D6I99_RS05170 pgsA 989192..989728 (+) 537 WP_057032899.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  D6I99_RS05175 rseP 989725..990831 (+) 1107 WP_136696260.1 RIP metalloprotease RseP -
  D6I99_RS05180 - 990824..991690 (+) 867 WP_057032903.1 VirK family antimicrobial peptide resistance protein -
  D6I99_RS05185 rpsF 991777..992154 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  D6I99_RS05190 ssb 992163..992714 (+) 552 WP_002853013.1 single-stranded DNA-binding protein Machinery gene
  D6I99_RS05195 rpsR 992725..992985 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  D6I99_RS05200 lon 993046..995421 (-) 2376 WP_002853487.1 endopeptidase La -
  D6I99_RS05205 - 995438..996085 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  D6I99_RS05210 fliW 996246..996635 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  D6I99_RS05215 proC 996635..997366 (+) 732 WP_136696261.1 pyrroline-5-carboxylate reductase Machinery gene
  D6I99_RS05220 ctsT 997363..997665 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20710.60 Da        Isoelectric Point: 5.0431

>NTDB_id=276529 D6I99_RS05190 WP_002853013.1 992163..992714(+) (ssb) [Campylobacter jejuni strain BC]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=276529 D6I99_RS05190 WP_002853013.1 992163..992714(+) (ssb) [Campylobacter jejuni strain BC]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGTACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361