Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D6I99_RS00990 Genome accession   NZ_CP032522
Coordinates   193319..194824 (-) Length   501 a.a.
NCBI ID   WP_136696076.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BC     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 188319..199824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6I99_RS00960 - 188521..189705 (-) 1185 WP_136696073.1 metallophosphoesterase -
  D6I99_RS00965 - 189715..189924 (-) 210 WP_052794263.1 alkylphosphonate utilization protein -
  D6I99_RS00970 - 189917..190636 (-) 720 WP_002857490.1 TerC family protein -
  D6I99_RS00975 purN 190708..191274 (-) 567 WP_002919799.1 phosphoribosylglycinamide formyltransferase -
  D6I99_RS00980 - 191265..192635 (-) 1371 WP_136696074.1 NAD(P)H-hydrate dehydratase -
  D6I99_RS00985 - 192619..193317 (-) 699 WP_087704685.1 NYN domain-containing protein -
  D6I99_RS00990 comM 193319..194824 (-) 1506 WP_136696076.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D6I99_RS00995 def 194821..195348 (-) 528 WP_002869061.1 peptide deformylase -
  D6I99_RS01000 clpP 195384..195968 (-) 585 WP_002806309.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  D6I99_RS01005 tig 195968..197302 (-) 1335 WP_136696078.1 trigger factor -
  D6I99_RS01010 folE 197446..198018 (+) 573 WP_136696080.1 GTP cyclohydrolase I FolE -
  D6I99_RS01015 fliI 198018..199403 (+) 1386 WP_136696083.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56506.55 Da        Isoelectric Point: 8.7353

>NTDB_id=276514 D6I99_RS00990 WP_136696076.1 193319..194824(-) (comM) [Campylobacter jejuni strain BC]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLILFLSAKIKKTKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFTNPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLREPLEDYKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKVSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNISKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=276514 D6I99_RS00990 WP_136696076.1 193319..194824(-) (comM) [Campylobacter jejuni strain BC]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGGCTTGCAAGTACAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACACTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATTACTATCAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGATCGCATTTTGACTTG
GCTATCGCTTTATTAATTCTTTTACAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGTACAAACGAGCTTTTTTCTTTGATTTTGTTTCTCTCTGCTAAAATTAAAAAAACTAAGATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTAGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGCTTTTCTCACAATCATCCTTTATTTACAAACCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGACTTTAAAGATATCAAAGGACAGGAAAAAGCCAAAAGAGCTTGCATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGCATGTGTGCTAAACGCCTTGTT
TATATCATGCCCCCTCAAAGTTTAAGTGAAATTTTAATGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGCCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCCA
GAATTGGAGAAGTAGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAACAAGCAAATCATAGAG
AGTTTAAGAGAACCTTTGGAGGATTATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGTGGAAATTTATTCTCCAAAAATCTTTCTTGTGTTTGTAGTGAAAATGAGA
TTAAAAAATACAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAGTAAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTAGTAAAAAACGGGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTAAGTCGTTTTTGTGTATTGGAAAAAGATGCCAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCACTCAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAGCAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.094

99.601

0.469
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

36.4

99.8

0.363