Detailed information
Bioinformatically predicted
Overview
| Name | pilF | Type | Machinery gene |
| Locus tag | APL_RS06640 | Genome accession | NC_009053 |
| Coordinates | 1464050..1464598 (-) | Length | 182 a.a. |
| NCBI ID | WP_011848557.1 | Uniprot ID | A3N1S3 |
| Organism | Actinobacillus pleuropneumoniae serovar 5b str. L20 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1459050..1469598
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APL_RS06625 (APL_1270) | - | 1459532..1460053 (+) | 522 | WP_193327846.1 | SprT family zinc-dependent metalloprotease | - |
| APL_RS06630 (APL_1271) | - | 1460158..1461444 (+) | 1287 | WP_005615681.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| APL_RS06635 (APL_1272) | - | 1461636..1463975 (-) | 2340 | WP_011848556.1 | Tex family protein | - |
| APL_RS06640 (APL_1273) | pilF | 1464050..1464598 (-) | 549 | WP_011848557.1 | type IV pilus biogenesis/stability protein PilW | Machinery gene |
| APL_RS06645 (APL_1274) | - | 1464652..1465833 (-) | 1182 | WP_009875290.1 | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | - |
| APL_RS06670 (APL_1275) | gltX | 1466737..1468176 (+) | 1440 | WP_011848558.1 | glutamate--tRNA ligase | - |
| APL_RS06680 (APL_1276) | yefM | 1468514..1468765 (+) | 252 | WP_005605062.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| APL_RS06685 | - | 1468762..1469022 (+) | 261 | WP_009875288.1 | Txe/YoeB family addiction module toxin | - |
| APL_RS06690 (APL_1277) | - | 1469179..1469346 (-) | 168 | WP_009875287.1 | Trm112 family protein | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 20671.35 Da Isoelectric Point: 6.9479
>NTDB_id=27622 APL_RS06640 WP_011848557.1 1464050..1464598(-) (pilF) [Actinobacillus pleuropneumoniae serovar 5b str. L20]
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKSRAAALR
MNLAKFLRNLTACMLLSVLFGCSSQLPTSQTTFNRSEAVKARINLALAYLDQHDLPKAKENIDKALSHDQNDYLPHSVLA
YYYQQIGDQVHAEQAYQQALKLSDNRPDVLNNYGTFLCKQAKFDQAYQQFEQAVKSEQPYYHQADSLENIVLCAKQEPNL
AKVNEALSQLEKLDKSRAAALR
Nucleotide
Download Length: 549 bp
>NTDB_id=27622 APL_RS06640 WP_011848557.1 1464050..1464598(-) (pilF) [Actinobacillus pleuropneumoniae serovar 5b str. L20]
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTATTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGTATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATTAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG
ATGAACCTTGCAAAATTTTTGCGAAATTTGACCGCTTGTATGCTGTTATCCGTGTTATTCGGTTGTTCTTCTCAGCTTCC
AACCTCCCAAACTACCTTTAATCGTTCGGAAGCGGTTAAAGCCCGTATTAATTTAGCCTTAGCGTATCTCGATCAACATG
ATTTACCCAAAGCGAAAGAGAATATTGATAAAGCGCTAAGCCACGATCAAAACGATTATTTGCCTCACTCTGTTTTAGCT
TATTACTATCAGCAAATCGGTGATCAAGTTCATGCGGAACAGGCTTATCAGCAAGCATTGAAATTAAGTGATAATCGTCC
GGATGTCTTAAATAATTACGGTACTTTTCTGTGTAAACAAGCCAAATTTGATCAGGCATATCAGCAGTTTGAGCAAGCGG
TGAAAAGCGAACAACCTTATTATCATCAAGCCGATAGCCTCGAAAATATTGTGTTATGTGCCAAACAAGAGCCGAATTTA
GCTAAAGTAAACGAAGCGTTAAGCCAATTAGAAAAGCTGGATAAATCAAGAGCGGCGGCACTACGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilF | Glaesserella parasuis strain SC1401 |
67.021 |
100 |
0.692 |
| pilF/pilF2 | Haemophilus influenzae Rd KW20 |
46.784 |
93.956 |
0.44 |