Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   C6B32_RS07365 Genome accession   NZ_CP027287
Coordinates   1479002..1479946 (+) Length   314 a.a.
NCBI ID   WP_065842860.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. testudinum strain 772     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1474002..1484946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6B32_RS07345 (C6B32_07345) - 1474648..1475703 (-) 1056 WP_065839152.1 glycosyltransferase family 4 protein -
  C6B32_RS07350 (C6B32_07350) - 1475700..1476620 (-) 921 WP_105459548.1 glycosyltransferase family 9 protein -
  C6B32_RS07355 (C6B32_07355) - 1476595..1477899 (-) 1305 WP_065839899.1 hypothetical protein -
  C6B32_RS07360 (C6B32_07360) - 1477987..1479018 (+) 1032 WP_065839898.1 glycosyltransferase family 4 protein -
  C6B32_RS07365 (C6B32_07365) waaF 1479002..1479946 (+) 945 WP_065842860.1 lipopolysaccharide heptosyltransferase II Regulator
  C6B32_RS07370 (C6B32_07370) gmhA 1479912..1480475 (-) 564 WP_023385769.1 D-sedoheptulose 7-phosphate isomerase -
  C6B32_RS07375 (C6B32_07375) rfaE1 1480478..1481854 (-) 1377 WP_023385770.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  C6B32_RS07380 (C6B32_07380) rfaD 1481847..1482815 (-) 969 WP_023385772.1 ADP-glyceromanno-heptose 6-epimerase -
  C6B32_RS07385 (C6B32_07385) gmhB 1482812..1483318 (-) 507 WP_058909494.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  C6B32_RS07390 (C6B32_07390) - 1483449..1483763 (+) 315 WP_058909495.1 c-type cytochrome -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 35745.91 Da        Isoelectric Point: 9.3438

>NTDB_id=276181 C6B32_RS07365 WP_065842860.1 1479002..1479946(+) (waaF) [Campylobacter fetus subsp. testudinum strain 772]
MRILIELPTWLGDAVMASAAVQSLALNYPNCKITFFGSEISTSIYSSYPNCENIIIDNSKKAKFRLFYLLKTALNLDKFD
IAVSFRSHFYSKVFFKFIKADKKAIFTPTKNEIHQVQKYMNFIINCLSLKQSIDELKLYFAPFKFKNKTLGLNPGASYGS
AKRWYPQYFADVAINLKKSYEVVIFGGKNEQNICDEIALELEKNGVKYQNLCNKTTICELVSFIAGLDMFITNDSGPMHI
AAAFKVPTIALFGPTKFKETSPYKNNNAKILHLDLDCMPCMKRVCPLNSHECMKNLTPKMVLDAIYKLNPQLDK

Nucleotide


Download         Length: 945 bp        

>NTDB_id=276181 C6B32_RS07365 WP_065842860.1 1479002..1479946(+) (waaF) [Campylobacter fetus subsp. testudinum strain 772]
ATGCGCATACTAATTGAGCTGCCCACATGGCTAGGTGACGCCGTGATGGCAAGCGCTGCTGTTCAAAGTCTAGCCCTAAA
CTATCCAAACTGTAAGATAACCTTTTTTGGATCAGAGATTAGCACGAGTATCTACAGCTCTTATCCAAACTGTGAAAATA
TCATTATCGATAATTCAAAAAAAGCTAAGTTCAGACTGTTTTATCTGCTAAAAACAGCTTTAAATTTAGATAAATTTGAT
ATAGCCGTAAGTTTTAGAAGTCACTTTTACTCAAAAGTATTTTTTAAATTTATAAAAGCAGACAAAAAAGCTATTTTTAC
ACCTACAAAAAACGAAATTCATCAGGTACAAAAATATATGAATTTTATTATCAATTGTCTGAGTTTAAAACAAAGCATAG
ATGAGCTAAAACTGTATTTTGCTCCTTTTAAATTTAAAAACAAAACTCTAGGGCTAAATCCAGGAGCAAGCTATGGAAGC
GCGAAAAGATGGTATCCGCAGTACTTTGCAGATGTAGCTATAAATTTAAAAAAGAGTTATGAAGTTGTCATTTTTGGAGG
AAAAAATGAACAAAATATCTGCGACGAAATAGCATTAGAACTTGAAAAAAACGGAGTAAAATACCAAAATTTATGTAACA
AAACCACTATTTGTGAGCTAGTAAGCTTTATAGCAGGTCTTGATATGTTTATCACTAACGATAGCGGTCCTATGCACATA
GCAGCAGCTTTTAAAGTGCCTACTATAGCACTTTTTGGACCTACTAAGTTCAAAGAAACCTCTCCATATAAAAATAACAA
TGCAAAGATACTACATCTTGATTTAGACTGTATGCCCTGTATGAAGAGAGTTTGCCCTTTAAACTCACACGAATGTATGA
AAAATCTAACACCAAAAATGGTGCTAGATGCTATTTATAAGCTAAATCCACAGCTTGACAAATAG

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(137-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.243

99.682

0.481

Multiple sequence alignment