Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   C6N19_RS02840 Genome accession   NZ_CP027250
Coordinates   354266..355075 (+) Length   269 a.a.
NCBI ID   WP_005078460.1    Uniprot ID   A0A009I3R3
Organism   Acinetobacter pittii strain WCHAP100004     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 349266..360075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6N19_RS02805 (C6N19_02825) - 349824..349979 (-) 156 WP_014207816.1 hypothetical protein -
  C6N19_RS02810 (C6N19_02830) rpoZ 350018..350296 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  C6N19_RS02815 (C6N19_02835) gmk 350369..350998 (-) 630 WP_002116973.1 guanylate kinase -
  C6N19_RS02820 (C6N19_02840) ispH 351121..352071 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  C6N19_RS02825 (C6N19_02845) fimU 352241..352714 (+) 474 WP_016802756.1 pilus assembly FimT family protein Machinery gene
  C6N19_RS02830 (C6N19_02850) pilV 352708..353268 (+) 561 WP_080564113.1 type IV pilus modification protein PilV Machinery gene
  C6N19_RS02835 (C6N19_02855) pilW 353268..354269 (+) 1002 WP_002116811.1 PilW family protein Machinery gene
  C6N19_RS02840 (C6N19_02860) pilX 354266..355075 (+) 810 WP_005078460.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  C6N19_RS02845 (C6N19_02865) pilY1 355087..358941 (+) 3855 WP_005078458.1 PilC/PilY family type IV pilus protein Machinery gene
  C6N19_RS02850 (C6N19_02870) pilY2 358952..359434 (+) 483 WP_005078457.1 type IV pilin protein Machinery gene
  C6N19_RS02855 (C6N19_02875) pilE 359431..359856 (+) 426 WP_106405813.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28532.34 Da        Isoelectric Point: 7.2645

>NTDB_id=276025 C6N19_RS02840 WP_005078460.1 354266..355075(+) (pilX) [Acinetobacter pittii strain WCHAP100004]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTTDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=276025 C6N19_RS02840 WP_005078460.1 354266..355075(+) (pilX) [Acinetobacter pittii strain WCHAP100004]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAACCCTGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCTAATAATGCAGTCGTTGAAGATGGCGGCGTAGCGG
GTTTCTGCGATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTCACCCAAGTTGCTGTAAGTGTTCCAACAGAC
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTTCCTAAAAGTATGTT
GTCTACGCAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACAGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009I3R3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.074

100

0.911

Multiple sequence alignment