Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF/pilF2   Type   Machinery gene
Locus tag   C3V42_RS06960 Genome accession   NZ_CP027235
Coordinates   1424639..1425181 (-) Length   180 a.a.
NCBI ID   WP_106014081.1    Uniprot ID   -
Organism   Haemophilus sp. oral taxon 036 strain F0629     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1419639..1430181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3V42_RS06935 (C3V42_06940) - 1419811..1420572 (+) 762 WP_048953843.1 class I SAM-dependent methyltransferase -
  C3V42_RS06940 (C3V42_06945) - 1420626..1421240 (-) 615 WP_048953841.1 YfgM family protein -
  C3V42_RS06945 (C3V42_06950) hisS 1421258..1422529 (-) 1272 WP_048953839.1 histidine--tRNA ligase -
  C3V42_RS06950 (C3V42_06955) ispG 1422539..1423645 (-) 1107 WP_106014079.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  C3V42_RS06955 (C3V42_06960) - 1423657..1424568 (-) 912 WP_106014080.1 RodZ family helix-turn-helix domain-containing protein -
  C3V42_RS06960 (C3V42_06965) pilF/pilF2 1424639..1425181 (-) 543 WP_106014081.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  C3V42_RS06965 (C3V42_06970) - 1425282..1426433 (-) 1152 WP_164994229.1 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN -
  C3V42_RS06970 (C3V42_06975) - 1426680..1427558 (+) 879 WP_106014083.1 serine hydrolase -
  C3V42_RS06975 (C3V42_06980) - 1427783..1428643 (+) 861 WP_226385911.1 metal ABC transporter substrate-binding protein -
  C3V42_RS06980 (C3V42_06985) - 1428643..1429563 (+) 921 WP_005637461.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20890.52 Da        Isoelectric Point: 8.9450

>NTDB_id=275954 C3V42_RS06960 WP_106014081.1 1424639..1425181(-) (pilF/pilF2) [Haemophilus sp. oral taxon 036 strain F0629]
MQKISKQLSAVISPFIFSACVSQSTIQDFNQQSAAKARVELALGYLQQNNPQLAKINLDKALQHDKDYYLVHSALAHYYQ
RQGEIENAHREYEIALKLNNQQGDLHNNFGTFLCRQKQFEQAQQQFQLALNSPNYYHQADTFENMALCAYSAKKMDIYQQ
ALQKLRQTDSKRAEKFNTFK

Nucleotide


Download         Length: 543 bp        

>NTDB_id=275954 C3V42_RS06960 WP_106014081.1 1424639..1425181(-) (pilF/pilF2) [Haemophilus sp. oral taxon 036 strain F0629]
ATGCAAAAAATAAGTAAACAACTCAGTGCGGTTATTTCCCCTTTCATTTTTTCTGCTTGCGTTTCTCAATCAACCATTCA
AGATTTCAATCAACAATCTGCAGCGAAAGCTCGCGTAGAACTTGCCCTCGGTTACCTTCAACAAAATAATCCTCAACTCG
CTAAAATCAACTTAGATAAAGCACTTCAACACGATAAAGATTACTATCTCGTGCATTCAGCTCTTGCACATTATTATCAG
CGACAAGGGGAAATAGAGAATGCACATCGTGAATATGAAATAGCTTTAAAGCTCAATAATCAACAGGGGGATTTACATAA
TAATTTTGGCACATTTTTATGTCGTCAAAAGCAATTTGAACAAGCTCAGCAGCAATTTCAACTCGCACTGAATTCACCTA
ATTATTATCATCAAGCAGATACATTTGAAAATATGGCCCTTTGTGCTTATTCCGCTAAAAAAATGGATATTTATCAACAA
GCATTACAAAAATTGCGACAAACAGATAGTAAACGAGCGGAAAAATTTAATACCTTTAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF/pilF2 Haemophilus influenzae Rd KW20

82.222

100

0.822
  pilF Glaesserella parasuis strain SC1401

47.027

100

0.483

Multiple sequence alignment