Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   C2E19_RS21820 Genome accession   NZ_CP027218
Coordinates   4768160..4768795 (-) Length   211 a.a.
NCBI ID   WP_129395040.1    Uniprot ID   A0A481R0J7
Organism   Pseudomonas sp. DTU12.3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4763160..4773795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2E19_RS21785 (C2E19_21825) - 4763393..4763863 (-) 471 WP_129395035.1 (2Fe-2S)-binding protein -
  C2E19_RS21790 (C2E19_21830) murB 4764276..4765295 (-) 1020 WP_129395036.1 UDP-N-acetylmuramate dehydrogenase -
  C2E19_RS21795 (C2E19_21835) - 4765292..4765756 (-) 465 WP_129395037.1 low molecular weight protein-tyrosine-phosphatase -
  C2E19_RS21800 (C2E19_21840) kdsB 4765756..4766520 (-) 765 WP_129395038.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  C2E19_RS21805 (C2E19_21845) - 4766517..4766702 (-) 186 WP_003174668.1 Trm112 family protein -
  C2E19_RS21810 (C2E19_21850) lpxK 4766725..4767735 (-) 1011 WP_129395039.1 tetraacyldisaccharide 4'-kinase -
  C2E19_RS21815 (C2E19_21855) - 4767735..4768163 (-) 429 WP_103307264.1 biopolymer transporter ExbD -
  C2E19_RS21820 (C2E19_21860) exbB 4768160..4768795 (-) 636 WP_129395040.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  C2E19_RS21825 (C2E19_21865) comA 4768897..4771131 (-) 2235 WP_129395041.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  C2E19_RS21830 (C2E19_21870) - 4771267..4771785 (+) 519 WP_129395042.1 DUF2062 domain-containing protein -
  C2E19_RS21835 (C2E19_21875) - 4771919..4772866 (-) 948 WP_129388636.1 transposase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22946.04 Da        Isoelectric Point: 6.8771

>NTDB_id=275797 C2E19_RS21820 WP_129395040.1 4768160..4768795(-) (exbB) [Pseudomonas sp. DTU12.3]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVSALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLTEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=275797 C2E19_RS21820 WP_129395040.1 4768160..4768795(-) (exbB) [Pseudomonas sp. DTU12.3]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCGATGGCGATTGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCACCTGTTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AACAGCTCAATAAAGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAGGCCGCCGCGCGGGTGATTCATGAACTCGAGCGCTACGT
CAGCGCGCTGGGCACCATCGCCGCCATGTCGCCGTTGCTCGGACTGCTCGGCACCGTGCTGGGCATGATCGATATTTTCA
GCGCCTTCACCGGTTCCGGCATGACCACCAACGCTTCGGTTTTGGCCGGTGGTATCTCCAAGGCACTGATTACCACCGCT
GCAGGCCTGATGGTCGGTATTCCAGCGGTGTTCTTCCATCGGTTCCTGCAACGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAACTGGTTGAAGTGGTGCAGGGCGACCGTGACGTCGACCTGACCGAGGGGCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A481R0J7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844

Multiple sequence alignment