Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C5Z26_RS08160 | Genome accession | NZ_CP027194 |
| Coordinates | 1660387..1660998 (+) | Length | 203 a.a. |
| NCBI ID | WP_105449473.1 | Uniprot ID | A0A2R3JWS0 |
| Organism | Lactobacillus sp. CBA3606 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1655387..1665998
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5Z26_RS08150 (C5Z26_08150) | gyrA | 1657190..1659715 (+) | 2526 | WP_370447989.1 | DNA gyrase subunit A | - |
| C5Z26_RS08155 (C5Z26_08155) | rpsF | 1660047..1660346 (+) | 300 | WP_105449472.1 | 30S ribosomal protein S6 | - |
| C5Z26_RS08160 (C5Z26_08160) | ssb | 1660387..1660998 (+) | 612 | WP_105449473.1 | single-stranded DNA-binding protein | Machinery gene |
| C5Z26_RS08165 (C5Z26_08165) | rpsR | 1661034..1661270 (+) | 237 | WP_105449474.1 | 30S ribosomal protein S18 | - |
| C5Z26_RS08170 (C5Z26_08170) | - | 1661883..1662614 (+) | 732 | WP_105449475.1 | WxL domain-containing protein | - |
| C5Z26_RS08175 (C5Z26_08175) | - | 1662701..1663774 (+) | 1074 | WP_105449476.1 | DUF916 and DUF3324 domain-containing protein | - |
| C5Z26_RS08180 (C5Z26_08180) | - | 1663810..1664205 (+) | 396 | WP_105449477.1 | LPXTG cell wall anchor domain-containing protein | - |
| C5Z26_RS08185 (C5Z26_08185) | - | 1664192..1665724 (+) | 1533 | WP_105449478.1 | cell surface protein | - |
Sequence
Protein
Download Length: 203 a.a. Molecular weight: 21885.25 Da Isoelectric Point: 4.6382
>NTDB_id=275683 C5Z26_RS08160 WP_105449473.1 1660387..1660998(+) (ssb) [Lactobacillus sp. CBA3606]
MINRTVLVGRLTRDPELRYTSGGAAVATFTLAVNRSFTNQNGEREADFINCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGQRVYVTEVVVDNFSLLESRAESERHQAANGGSNNGSNASYNNNNSGYNRQDQNAAPQQSSTTNNNPFGNGNPS
GASNTNGTAGNNSAPTSGSNENQADPFANNGDQIDISDDDLPF
MINRTVLVGRLTRDPELRYTSGGAAVATFTLAVNRSFTNQNGEREADFINCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGQRVYVTEVVVDNFSLLESRAESERHQAANGGSNNGSNASYNNNNSGYNRQDQNAAPQQSSTTNNNPFGNGNPS
GASNTNGTAGNNSAPTSGSNENQADPFANNGDQIDISDDDLPF
Nucleotide
Download Length: 612 bp
>NTDB_id=275683 C5Z26_RS08160 WP_105449473.1 1660387..1660998(+) (ssb) [Lactobacillus sp. CBA3606]
ATGATTAACCGTACAGTTCTTGTTGGCCGACTAACAAGAGATCCCGAATTACGATACACTTCTGGTGGCGCTGCCGTGGC
AACGTTCACGCTGGCTGTTAACCGGAGTTTTACTAATCAAAATGGGGAACGTGAAGCTGATTTCATCAATTGCGTCATCT
GGCGTAAAGCTGCTGAAAATTTTGCGAACTTTACTCATAAAGGGTCGCTGGTTGGGATTGATGGCCGGATTCAAACCCGG
AATTATGAAAACCAACAGGGACAACGCGTTTATGTTACAGAAGTGGTCGTTGACAACTTCTCATTATTAGAATCACGAGC
AGAGTCTGAACGTCATCAGGCTGCTAATGGTGGTAGTAATAACGGCAGCAATGCTAGTTATAACAACAATAATAGTGGGT
ATAATCGTCAGGACCAAAACGCAGCTCCTCAACAATCATCAACGACTAACAATAATCCTTTTGGTAATGGTAATCCTAGT
GGTGCTTCTAACACCAATGGGACGGCTGGTAACAATAGCGCCCCAACTAGTGGGTCTAATGAAAACCAAGCTGATCCATT
TGCCAACAATGGGGATCAAATTGATATTTCGGATGATGATTTACCATTCTAG
ATGATTAACCGTACAGTTCTTGTTGGCCGACTAACAAGAGATCCCGAATTACGATACACTTCTGGTGGCGCTGCCGTGGC
AACGTTCACGCTGGCTGTTAACCGGAGTTTTACTAATCAAAATGGGGAACGTGAAGCTGATTTCATCAATTGCGTCATCT
GGCGTAAAGCTGCTGAAAATTTTGCGAACTTTACTCATAAAGGGTCGCTGGTTGGGATTGATGGCCGGATTCAAACCCGG
AATTATGAAAACCAACAGGGACAACGCGTTTATGTTACAGAAGTGGTCGTTGACAACTTCTCATTATTAGAATCACGAGC
AGAGTCTGAACGTCATCAGGCTGCTAATGGTGGTAGTAATAACGGCAGCAATGCTAGTTATAACAACAATAATAGTGGGT
ATAATCGTCAGGACCAAAACGCAGCTCCTCAACAATCATCAACGACTAACAATAATCCTTTTGGTAATGGTAATCCTAGT
GGTGCTTCTAACACCAATGGGACGGCTGGTAACAATAGCGCCCCAACTAGTGGGTCTAATGAAAACCAAGCTGATCCATT
TGCCAACAATGGGGATCAAATTGATATTTCGGATGATGATTTACCATTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.069 |
100 |
0.621 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.695 |
100 |
0.537 |