Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C5Z25_RS06940 Genome accession   NZ_CP027190
Coordinates   1425463..1426077 (+) Length   204 a.a.
NCBI ID   WP_105451969.1    Uniprot ID   -
Organism   Lactobacillus sp. CBA3605     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1420463..1431077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Z25_RS06930 (C5Z25_06930) gyrA 1422259..1424778 (+) 2520 WP_370447222.1 DNA gyrase subunit A -
  C5Z25_RS06935 (C5Z25_06935) rpsF 1425123..1425422 (+) 300 WP_105449472.1 30S ribosomal protein S6 -
  C5Z25_RS06940 (C5Z25_06940) ssb 1425463..1426077 (+) 615 WP_105451969.1 single-stranded DNA-binding protein Machinery gene
  C5Z25_RS06945 (C5Z25_06945) rpsR 1426113..1426349 (+) 237 WP_105449474.1 30S ribosomal protein S18 -
  C5Z25_RS06950 (C5Z25_06950) - 1426954..1427676 (+) 723 WP_105451970.1 WxL domain-containing protein -
  C5Z25_RS06955 (C5Z25_06955) - 1427763..1428836 (+) 1074 WP_105451971.1 DUF916 and DUF3324 domain-containing protein -
  C5Z25_RS06960 (C5Z25_06960) - 1428872..1429261 (+) 390 WP_105451972.1 LPXTG cell wall anchor domain-containing protein -
  C5Z25_RS06965 (C5Z25_06965) - 1429258..1430826 (+) 1569 WP_158682922.1 cell surface protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22029.38 Da        Isoelectric Point: 4.6382

>NTDB_id=275651 C5Z25_RS06940 WP_105451969.1 1425463..1426077(+) (ssb) [Lactobacillus sp. CBA3605]
MINRTVLVGRLTRDPELRYTSGGAAVATFTLAVNRSFTNQNGEREADFINCVIWRKAAENFANFTHKGSLVGIDGRIQTR
NYENQQGQRVYVTEVVVDNFSLLESRAESERHQSANGGSNNSNNASYNNTNNSGYNRQDQNAAPQQSSATNNNPFGNGNP
SGASNTNGTAGNNSAPTSGSNENQADPFANNGDQIDISDDDLPF

Nucleotide


Download         Length: 615 bp        

>NTDB_id=275651 C5Z25_RS06940 WP_105451969.1 1425463..1426077(+) (ssb) [Lactobacillus sp. CBA3605]
ATGATTAACCGTACAGTTCTTGTTGGCCGACTAACAAGAGATCCCGAATTACGATACACTTCTGGTGGCGCTGCTGTGGC
AACGTTCACGCTGGCTGTTAACCGGAGTTTTACTAATCAAAATGGGGAACGTGAAGCTGATTTCATCAATTGCGTCATTT
GGCGTAAAGCTGCTGAAAATTTTGCGAACTTTACCCATAAAGGGTCGCTGGTTGGGATTGATGGCCGGATTCAAACCCGG
AATTATGAAAACCAACAGGGACAACGCGTTTATGTTACAGAAGTGGTCGTTGACAACTTCTCATTATTAGAATCACGTGC
AGAATCTGAACGTCATCAGTCTGCTAATGGTGGTAGTAATAACAGCAATAATGCTAGTTATAACAACACTAATAATAGTG
GGTATAATCGTCAAGACCAAAACGCAGCTCCTCAACAATCATCAGCGACTAACAATAATCCTTTTGGTAATGGTAATCCT
AGTGGTGCATCTAACACCAATGGGACGGCTGGTAACAATAGTGCCCCAACTAGTGGGTCTAATGAAAACCAAGCTGATCC
ATTTGCCAATAATGGGGATCAAATTGATATTTCGGATGATGATTTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

62.745

100

0.627
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.941

100

0.529

Multiple sequence alignment