Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D3Z18_RS07540 Genome accession   NZ_CP032316
Coordinates   1371498..1372049 (+) Length   183 a.a.
NCBI ID   WP_002853013.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain HPC5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1366498..1377049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3Z18_RS07505 (D3Z18_07505) - 1366688..1367113 (+) 426 WP_002852983.1 GNAT family N-acetyltransferase -
  D3Z18_RS07510 (D3Z18_07510) - 1367177..1367797 (+) 621 WP_038401409.1 NAD(P)H-dependent oxidoreductase -
  D3Z18_RS07515 (D3Z18_07515) rdxA 1367797..1368402 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  D3Z18_RS07520 (D3Z18_07520) pgsA 1368527..1369063 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  D3Z18_RS07525 (D3Z18_07525) rseP 1369060..1370166 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  D3Z18_RS07530 (D3Z18_07530) - 1370159..1371025 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  D3Z18_RS07535 (D3Z18_07535) rpsF 1371112..1371489 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  D3Z18_RS07540 (D3Z18_07540) ssb 1371498..1372049 (+) 552 WP_002853013.1 single-stranded DNA-binding protein Machinery gene
  D3Z18_RS07545 (D3Z18_07545) rpsR 1372060..1372320 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  D3Z18_RS07550 (D3Z18_07550) lon 1372380..1374755 (-) 2376 WP_002885146.1 endopeptidase La -
  D3Z18_RS07555 (D3Z18_07555) - 1374772..1375419 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  D3Z18_RS07560 (D3Z18_07560) fliW 1375580..1375969 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  D3Z18_RS07565 (D3Z18_07565) proC 1375969..1376700 (+) 732 WP_038401410.1 pyrroline-5-carboxylate reductase Machinery gene
  D3Z18_RS07570 (D3Z18_07570) ctsT 1376697..1376999 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20710.60 Da        Isoelectric Point: 5.0431

>NTDB_id=275611 D3Z18_RS07540 WP_002853013.1 1371498..1372049(+) (ssb) [Campylobacter jejuni subsp. jejuni strain HPC5]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=275611 D3Z18_RS07540 WP_002853013.1 1371498..1372049(+) (ssb) [Campylobacter jejuni subsp. jejuni strain HPC5]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361