Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CSB70_RS19880 Genome accession   NZ_CP027178
Coordinates   4051654..4053075 (-) Length   473 a.a.
NCBI ID   WP_000840557.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AR_0070     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4046654..4058075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB70_RS19865 (CSB70_3986) lptG 4047706..4048776 (+) 1071 WP_000881094.1 LPS export ABC transporter permease LptG -
  CSB70_RS19870 (CSB70_3987) gpmI 4048903..4050450 (+) 1548 WP_000128749.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  CSB70_RS19875 (CSB70_3988) - 4050466..4051650 (+) 1185 WP_000939107.1 S41 family peptidase -
  CSB70_RS19880 (CSB70_3989) pilR 4051654..4053075 (-) 1422 WP_000840557.1 sigma-54-dependent transcriptional regulator Regulator
  CSB70_RS19885 (CSB70_3990) pilS 4053101..4054669 (-) 1569 WP_001160347.1 sensor histidine kinase Regulator
  CSB70_RS19890 (CSB70_3991) - 4054680..4055315 (-) 636 WP_000633799.1 response regulator -
  CSB70_RS19895 (CSB70_3992) pbpG 4055528..4056574 (+) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  CSB70_RS19900 (CSB70_3993) thrC 4056679..4057818 (-) 1140 WP_000063593.1 threonine synthase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 52988.16 Da        Isoelectric Point: 6.5058

>NTDB_id=275549 CSB70_RS19880 WP_000840557.1 4051654..4053075(-) (pilR) [Acinetobacter baumannii strain AR_0070]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGIDLVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKVESDFAESALENKLLIGCSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDVLL
LANHFIQKICMEWETTPKQLTEAAETYLLQQHFPGNVRELRNMIERAITLSEDTTIDVSHLHPAPLRANISNPFASVAQS
IQTTVAAPQVVKKLPSEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=275549 CSB70_RS19880 WP_000840557.1 4051654..4053075(-) (pilR) [Acinetobacter baumannii strain AR_0070]
ATGGCAGAACAGCAACCACTAGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATCTAAACTTACCCGATGGGAGTGGGATAGATTTAGTTAAACATGTCTCTCAAAATTATACTAATACTCCCATT
GCAGTTTTAACTGCCTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
AGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTGAATCGGCAAAAAGTAGAGTCTGATTTTGCCGAGAGTG
CTTTAGAAAACAAATTATTAATCGGTTGTTCTCTGCCTATTCAACAATTACGCATCGCAATTAAAAAAATTGCTCGCTCT
CAAGCACCGGTATTTGTTACCGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCTAACTTAGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCAATTAACTGCGGTGCCATTCCAACCGAACTCATGGAAAGTGAGCTTTTTGGGCATAAAA
AAGGGAGCTTTACCGGAGCAACTCAAGATAAACAAGGCCTCATTTTATCGGCACACGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCTTTAAGTATGCAGGTCAAACTGCTCCGCGCAGTACAGGAAAAAAAGATCCGGCCTGTCGGTTCAGA
TCAGGAAATCGATGTTGATTTCCGTGTGATTAGTGCAAGTCATCAAGACTTAGATTTATTAGTTCGACAGGGCAAATTCC
GTCAAGATTTATTCTTCCGTATTCACGTTATGGACCTCATATTGCCACCTCTACGTGAACGTGGCGAAGATGTCCTTTTA
CTGGCCAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACGACACCTAAACAATTAACAGAAGCGGCCGAAACTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGTGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGATA
CCACTATAGATGTATCTCATTTACATCCTGCTCCACTAAGAGCAAATATTTCTAATCCTTTTGCTTCGGTTGCTCAAAGC
ATACAAACCACTGTGGCAGCTCCTCAAGTCGTAAAAAAATTACCAAGTGAAGGCTTAGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTACTCAATGCACTCAATATGACTCATTGGAATCGTACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCGTCTGAAAAAATTTGGCTTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(141-306)

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

97.463

100

0.975
  pilR Pseudomonas aeruginosa PAK

50.545

97.04

0.49

Multiple sequence alignment