Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   C5695_RS12115 Genome accession   NZ_CP027116
Coordinates   2338528..2340261 (-) Length   577 a.a.
NCBI ID   WP_117730949.1    Uniprot ID   -
Organism   Bacillus pumilus strain 145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2333528..2345261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS12095 (C5695_12145) - 2334410..2335510 (-) 1101 WP_117730946.1 Rap family tetratricopeptide repeat protein -
  C5695_RS12100 (C5695_12150) - 2335498..2335788 (-) 291 WP_233230732.1 hypothetical protein -
  C5695_RS12105 (C5695_12155) spo0A 2335964..2336767 (-) 804 WP_012010520.1 sporulation transcription factor Spo0A Regulator
  C5695_RS12110 (C5695_12160) spoIVB 2337053..2338330 (-) 1278 WP_117730948.1 SpoIVB peptidase -
  C5695_RS12115 (C5695_12165) recN 2338528..2340261 (-) 1734 WP_117730949.1 DNA repair protein RecN Machinery gene
  C5695_RS12120 (C5695_12170) argR 2340295..2340744 (-) 450 WP_117730950.1 transcriptional regulator ArgR -
  C5695_RS12125 (C5695_12175) - 2340908..2341762 (-) 855 WP_117730951.1 TlyA family RNA methyltransferase -
  C5695_RS12130 (C5695_12180) dxs 2341759..2343660 (-) 1902 WP_117730952.1 1-deoxy-D-xylulose-5-phosphate synthase -
  C5695_RS12135 (C5695_12185) - 2343811..2344701 (-) 891 WP_117730953.1 polyprenyl synthetase family protein -
  C5695_RS12140 (C5695_12190) - 2344691..2344951 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64703.50 Da        Isoelectric Point: 4.8093

>NTDB_id=275058 C5695_RS12115 WP_117730949.1 2338528..2340261(-) (recN) [Bacillus pumilus strain 145]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEYVRYGEKKAELEGLFLVPADHPVFALC
KEQGIDASDEMMILRRDLNHNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLYLLDQFGAEEIAPALS
QYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRNE
QGGLDWVGMSSSELDQVSDINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EDILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKEIQAELKDLYMEKSSFDTAFSI
RYAPFGSTDFPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQSIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=275058 C5695_RS12115 WP_117730949.1 2338528..2340261(-) (recN) [Bacillus pumilus strain 145]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTTCT
CACAGGGGAAACAGGTGCCGGAAAATCGATTATGATTGATGCTGTCTCTCTTCTTGTGGGAGGAAGAGGGTCGTCTGAAT
ACGTTCGTTATGGTGAAAAAAAAGCAGAGCTGGAAGGACTTTTTCTTGTACCAGCTGATCATCCTGTATTTGCTCTATGC
AAAGAGCAGGGAATTGACGCATCAGATGAAATGATGATTCTTCGCCGTGACTTGAACCATAACGGAAAAAGCATCTGCCG
CATCAATGGCAAGCTTGTCACGATCTCGCTTTTACGGGAGGTAGGACGCCTTTTACTCGATATACACGGGCAGCACGACA
ACCAGCTATTGATGGAGGATGAAAATCATCTGTATTTGCTCGATCAGTTTGGAGCAGAAGAAATTGCACCTGCTTTGTCA
CAATATCAGGAAGCGTATGAGCAATATACTAAGACAGCCCAAAAGTTAAAACAGCTCTCTGAAAATGAGCAAGAAATGGT
GCACCGATTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGCTTC
AGGAAGAGCGTCATCAAATCAGCAACTACGAAAAAATCTTTTCCTCGCTTCAAAACGCATATAACGCCTTGCGCAATGAG
CAGGGAGGACTTGATTGGGTTGGTATGTCTTCAAGCGAGCTCGATCAGGTTTCTGACATCAATGACGATCTGAAAAAGCT
ATCTGAACAAGTGTCGAACTCCTATTACTTATTAGAGGATTCGACATTCCAAATGCGAAGCATGCTGGATCAATTAGAGT
TCGACCCGGCGCGTCTTGATTTTATCGAATCAAGGTTGAATGAAATGAAGCAGTTGAAACGAAAATATGGTACAACGGTT
GAGGACATTTTGGAGTATGCAGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGAGACAGCCACTTGCAGACACT
CAAAAATAAATTGGATGCGATGAGCCGTGATGCCCTGCTGGAAGCACTCAACGTTTCGGAGCTCCGTAAAAAATGGGCCA
AAAAGCTAGCGAAGGAAATTCAAGCGGAATTAAAGGATTTATATATGGAGAAGTCATCTTTTGACACAGCTTTTTCCATT
CGGTATGCACCTTTTGGAAGCACAGACTTCCCGCTGCTAGATGGCAAGCCCGTCCAGCTCGGAAAAAACGGAATTGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCAAAAGTGGCCTCTGGTGGAGAAATTTCAC
GTGTCATGCTTGCCGTAAAGAGTATTTTCTCAGCCAAACAAGAAGTCACTTCCATTATTTTTGATGAGGTCGATACAGGA
GTAAGCGGAAGAGTCGCACAGTCCATTGCCGAAAAAATTTACAAAGTAGCGGCTGGTTCACAAGTGCTCTGCATTACGCA
CCTCCCGCAAGTAGCAGCGATGGCCGACACACATCTCTTTATTTCTAAACGCTCTAAAGCCGGCAGAACACTGACGAGCG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCTGGTGTGGAAGTTACTGAGCTGACAAAA
CAACATGCAAAAGAATTGCTGCATCAAGCAAACGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.217

100

0.752

Multiple sequence alignment