Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   C5695_RS12105 Genome accession   NZ_CP027116
Coordinates   2335964..2336767 (-) Length   267 a.a.
NCBI ID   WP_012010520.1    Uniprot ID   W6IDW7
Organism   Bacillus pumilus strain 145     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2330964..2341767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS12085 (C5695_12135) - 2333123..2333359 (+) 237 WP_034661240.1 DUF2627 domain-containing protein -
  C5695_RS12090 (C5695_12140) - 2333446..2334183 (-) 738 WP_117730945.1 glycerophosphodiester phosphodiesterase -
  C5695_RS12095 (C5695_12145) - 2334410..2335510 (-) 1101 WP_117730946.1 Rap family tetratricopeptide repeat protein -
  C5695_RS12100 (C5695_12150) - 2335498..2335788 (-) 291 WP_233230732.1 hypothetical protein -
  C5695_RS12105 (C5695_12155) spo0A 2335964..2336767 (-) 804 WP_012010520.1 sporulation transcription factor Spo0A Regulator
  C5695_RS12110 (C5695_12160) spoIVB 2337053..2338330 (-) 1278 WP_117730948.1 SpoIVB peptidase -
  C5695_RS12115 (C5695_12165) recN 2338528..2340261 (-) 1734 WP_117730949.1 DNA repair protein RecN Machinery gene
  C5695_RS12120 (C5695_12170) argR 2340295..2340744 (-) 450 WP_117730950.1 transcriptional regulator ArgR -
  C5695_RS12125 (C5695_12175) - 2340908..2341762 (-) 855 WP_117730951.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29918.44 Da        Isoelectric Point: 6.3913

>NTDB_id=275057 C5695_RS12105 WP_012010520.1 2335964..2336767(-) (spo0A) [Bacillus pumilus strain 145]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=275057 C5695_RS12105 WP_012010520.1 2335964..2336767(-) (spo0A) [Bacillus pumilus strain 145]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGTCTATTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAGTGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTCGAACGCCTCCGTGAAAACAATGACATGACCAAACAG
CCAAGTGTGATTATGCTAACGGCGTTCGGACAAGAAGATGTCACGAAAAAAGCTGTTGATTTGGGCGCATCCTATTTCAT
CTTAAAACCATTTGATATGGAAAACCTAGTCGGTCATATTCGTCAAGTCAGCGGAAACGGCACACAAGTTACCCATCGAT
CTTCATCTATCCAAAACAGTGTTCTTCGCAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACGATT
ATTCATGAGATTGGCGTCCCAGCACATATTAAAGGCTATTTATACTTAAGAGAAGCGATTTCAATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATTACAAAAGTGCTTTACCCAGACATCGCGAAGAAATTTAACACGACCGCCAGCAGGGTGGAAC
GAGCGATTCGCCATGCCATTGAAGTTGCATGGAGCAGAGGAAACATCGATTCCATTTCCTCACTCTTTGGTTATACAGTC
AGCATGTCTAAAGCAAAACCAACCAATTCTGAATTTATTGCCATGGTAGCCGATCGTCTACGATTAGAGCATAGAGCTAG
CTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6IDW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.433

100

0.888

Multiple sequence alignment