Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   C5695_RS07160 Genome accession   NZ_CP027116
Coordinates   1408846..1409421 (+) Length   191 a.a.
NCBI ID   WP_117730134.1    Uniprot ID   A0AAD0HLP9
Organism   Bacillus pumilus strain 145     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1403846..1414421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS07130 (C5695_07135) dapD 1403956..1404666 (+) 711 WP_117730131.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  C5695_RS07135 (C5695_07140) - 1404701..1405879 (+) 1179 WP_117730132.1 N-acetyldiaminopimelate deacetylase -
  C5695_RS07140 (C5695_07145) - 1405930..1406172 (+) 243 WP_003211408.1 YkuS family protein -
  C5695_RS07145 (C5695_07150) - 1406199..1407008 (-) 810 WP_117730133.1 mechanosensitive ion channel family protein -
  C5695_RS07150 (C5695_07155) ahpA 1407281..1407823 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  C5695_RS07155 (C5695_07160) - 1407906..1408364 (+) 459 WP_034662741.1 TlpA disulfide reductase family protein -
  C5695_RS07160 (C5695_07165) rok 1408846..1409421 (+) 576 WP_117730134.1 transcriptional regulator Rok Regulator
  C5695_RS07165 (C5695_07170) - 1409473..1410390 (-) 918 WP_117730135.1 sigmaE regulated sporulation protein -
  C5695_RS07170 (C5695_07175) - 1410475..1411056 (+) 582 WP_117730136.1 molybdenum cofactor guanylyltransferase -
  C5695_RS07175 (C5695_07180) - 1411086..1412102 (+) 1017 WP_117730137.1 thiazole biosynthesis adenylyltransferase ThiF -
  C5695_RS07180 (C5695_07185) glp 1412112..1413389 (+) 1278 WP_187441792.1 gephyrin-like molybdotransferase Glp -
  C5695_RS07185 (C5695_07190) mobB 1413371..1413898 (+) 528 WP_117733041.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  C5695_RS07190 (C5695_07195) - 1413891..1414382 (+) 492 WP_117730139.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21559.50 Da        Isoelectric Point: 9.7309

>NTDB_id=275049 C5695_RS07160 WP_117730134.1 1408846..1409421(+) (rok) [Bacillus pumilus strain 145]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQP
PAQSNASSSLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTT
FMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=275049 C5695_RS07160 WP_117730134.1 1408846..1409421(+) (rok) [Bacillus pumilus strain 145]
TTGTTTAATGAGAGGGAAGCGTTACGTTTACGATTGGAGCAATTAAACGAAGCAGAAGTAAAGGTCATTCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTGCGTACAGAGAGAAAGACGGATTCACTGCCTGTATTAGCTGAACTAGCTGCACAAGAAATGAGAAGCTACCAGCCA
CCTGCACAATCAAATGCTTCATCATCCTTAGGAACAGGACAGCTAAACGGTGCACCTGTAGGTATTCCTGAAGGGTCGAC
AAGACGCAGAAGAGGGACAGCTCGTCCTGGCTCAAAGGCAGCTAAACTTCGTGAAGCGGCGATTAAAACATTAAAGCGTC
ATAATGCAGCGATTAAAAGCTCAGAGCTTCAAAAAGAGATTGAAAAAGAGAGCGGTCTTGAAATCCCTAATATGACAACG
TTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAACCATATCGCGGACAGTATATTTTAGAGGGCGACATTCA
AACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

80.319

98.429

0.791

Multiple sequence alignment