Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   D2M30_RS16375 Genome accession   NZ_CP032146
Coordinates   3211819..3212451 (-) Length   210 a.a.
NCBI ID   WP_003151798.1    Uniprot ID   A0A9P1NJB3
Organism   Bacillus amyloliquefaciens strain YP6     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3206819..3217451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS16355 (D2M30_16380) - 3207848..3208033 (-) 186 WP_003151806.1 YvzF family protein -
  D2M30_RS16360 (D2M30_16385) - 3208150..3209592 (+) 1443 WP_045511896.1 spore germination protein -
  D2M30_RS16365 (D2M30_16390) - 3209567..3210667 (+) 1101 WP_088613427.1 spore germination protein -
  D2M30_RS16370 (D2M30_16395) - 3210664..3211776 (+) 1113 WP_125123216.1 Ger(x)C family spore germination protein -
  D2M30_RS16375 (D2M30_16400) vraR 3211819..3212451 (-) 633 WP_003151798.1 response regulator transcription factor Regulator
  D2M30_RS16380 (D2M30_16405) liaS 3212429..3213511 (-) 1083 WP_003151796.1 two-component system sensor histidine kinase LiaS -
  D2M30_RS16385 (D2M30_16410) liaF 3213508..3214239 (-) 732 WP_125123217.1 cell wall-active antibiotics response protein LiaF -
  D2M30_RS16390 (D2M30_16415) - 3214268..3215137 (-) 870 WP_125123218.1 DUF4097 domain-containing protein -
  D2M30_RS16395 (D2M30_16420) liaH 3215243..3215920 (-) 678 WP_065522203.1 stress responsive protein LiaH -
  D2M30_RS16400 (D2M30_16425) - 3215934..3216314 (-) 381 WP_065522204.1 protein liaI -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22991.65 Da        Isoelectric Point: 4.8837

>NTDB_id=274878 D2M30_RS16375 WP_003151798.1 3211819..3212451(-) (vraR) [Bacillus amyloliquefaciens strain YP6]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVAGEASDGQQGVDLAAELLPDVILMDLVMDGMDGIEATKQICAKLNDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIAEAIRAAAKGEPKLESKVAGKVLSRLRHSENQLPHETLTKRELEILCLV
AEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVT

Nucleotide


Download         Length: 633 bp        

>NTDB_id=274878 D2M30_RS16375 WP_003151798.1 3211819..3212451(-) (vraR) [Bacillus amyloliquefaciens strain YP6]
GTGATTCGAGTGTTACTGATTGATGATCACGAAATGGTCAGGATGGGCCTGGCCGCATTTTTAGAAGCACAGCCGGACAT
TGAAGTCGCCGGTGAAGCGTCAGACGGACAGCAGGGCGTCGATCTGGCCGCAGAGCTTTTGCCGGATGTCATTTTAATGG
ATCTTGTCATGGACGGCATGGACGGCATCGAAGCGACAAAACAGATCTGCGCGAAACTCAATGATCCGAAAATCATTGTG
CTGACGAGCTTTATTGATGACGACAAAGTGTATCCGGTGATCGAAGCGGGGGCGCTCAGCTATTTGCTGAAAACATCCAA
AGCGGCAGAAATAGCCGAAGCCATCAGAGCGGCTGCCAAGGGCGAACCGAAACTTGAATCGAAGGTGGCGGGAAAAGTGC
TGTCAAGGCTGCGCCATTCAGAGAATCAGCTTCCGCATGAAACACTGACAAAAAGAGAACTGGAAATCCTCTGTCTCGTC
GCGGAAGGCAAGACGAACAAAGAGATTGGAGAAGAGCTGTTCATAACGATTAAAACGGTGAAAACCCACATCACGAATAT
ATTGTCAAAGCTTGATGTTAGTGACCGCACGCAGGCAGCCGTATATGCCCACCGCAATCATCTCGTGACATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9P1NJB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50.481

99.048

0.5
  degU Bacillus subtilis subsp. subtilis str. 168

36.771

100

0.39