Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   D2M30_RS08665 Genome accession   NZ_CP032146
Coordinates   1706882..1708759 (+) Length   625 a.a.
NCBI ID   WP_125122623.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1701882..1713759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS08650 (D2M30_08665) ymcA 1702935..1703366 (+) 432 WP_045506081.1 RicAFT regulatory complex protein RicA family protein Regulator
  D2M30_RS08655 (D2M30_08670) cotE 1703620..1704165 (+) 546 WP_013352324.1 outer spore coat protein CotE -
  D2M30_RS08660 (D2M30_08675) hexA 1704281..1706866 (+) 2586 WP_125123604.1 DNA mismatch repair protein MutS Machinery gene
  D2M30_RS08665 (D2M30_08680) hexB 1706882..1708759 (+) 1878 WP_125122623.1 DNA mismatch repair endonuclease MutL Machinery gene
  D2M30_RS08670 (D2M30_08685) - 1709224..1709901 (+) 678 WP_125123605.1 MBL fold metallo-hydrolase -
  D2M30_RS08675 (D2M30_08690) fabD 1710216..1711085 (+) 870 WP_125122624.1 ACP S-malonyltransferase -
  D2M30_RS08680 (D2M30_08695) - 1711220..1712194 (+) 975 WP_125122625.1 acyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70236.41 Da        Isoelectric Point: 6.0177

>NTDB_id=274829 D2M30_RS08665 WP_125122623.1 1706882..1708759(+) (hexB) [Bacillus amyloliquefaciens strain YP6]
MAKVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIDIEEAGLSSIRVLDNGEGMETEDCKRAFRRHATSK
IKDENDLFRVRTLGFRGEALPSIASVSHLEIKTSIGEGAGTHLILQGGNMISEQRSSSRKGTEIIVTNLFFNTPARLKYM
KTVHTELGNITDVVNRIALAHPEVSIRLRHQGKNLLQTNGNGDVRHVLAAIYGTAVAKKMIPLHVSSLDFEVKGYIALPE
ITRASRNYMSSVINGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNVHPSKLEVRLSKETELHELIRDG
IKEVFQKQRLIPSAQLPKKSAPAPIKNEQQFMTFGESAPERKLPEKTPEPSYSPMKLSSVVKEPAPVTEEEFQPNEAVHE
VPPETSVPETAAPVSDILSPEEEAVSEEIQEERVPVMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGQV
EPEVQDMIVPLTFHYAANEALIIEQHQHELESVGVFLEAFGTNSYIVRCHPAWFPKGEEAELIEEIIQQVLDAKQIDIKK
LREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRRTADPFTCPHGRPIIIHHSTYEMEKMFKRVM

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=274829 D2M30_RS08665 WP_125122623.1 1706882..1708759(+) (hexB) [Bacillus amyloliquefaciens strain YP6]
TTGGCAAAAGTCATCCAGCTGTCAGATGAGCTTTCAAATAAAATAGCGGCCGGTGAGGTGGTGGAACGGCCCGCCTCTGT
CGTTAAAGAATTGGTGGAAAACGCTATCGACGCAAACAGCACAGTCATTGAAATCGATATAGAGGAAGCGGGGCTTTCGT
CGATTCGGGTGCTCGACAATGGCGAAGGTATGGAAACCGAGGATTGCAAGCGGGCTTTCCGCCGCCACGCGACCAGTAAA
ATCAAAGATGAAAATGACCTGTTTCGGGTGAGAACACTCGGTTTCCGCGGAGAAGCTTTGCCAAGTATCGCGTCTGTTTC
TCATCTGGAAATCAAAACGAGCATCGGCGAGGGAGCGGGAACTCATCTCATTCTTCAGGGCGGGAATATGATTTCTGAAC
AGAGATCTTCCAGCAGAAAAGGGACGGAGATCATCGTGACTAATCTGTTTTTCAATACACCCGCCAGATTAAAATATATG
AAAACCGTGCATACGGAGCTCGGCAATATTACGGATGTCGTCAACCGGATCGCTCTTGCGCATCCGGAAGTATCGATCCG
CCTCCGCCATCAGGGGAAAAACCTGCTGCAGACAAACGGAAACGGGGACGTGCGCCATGTGCTGGCCGCAATTTACGGGA
CGGCGGTTGCGAAAAAAATGATACCGCTCCATGTCAGCTCACTTGATTTTGAAGTCAAGGGCTACATTGCGCTGCCGGAA
ATCACGCGTGCATCCAGAAACTACATGTCATCTGTCATTAACGGAAGATACATTAAGAATTTCCCGCTTGTAAAAGCGGT
GCATGAGGGTTATCACACGCTTCTGCCGATCGGCCGTCATCCGATTACGTTTATCGAAATTACGATGGATCCGATTTTAG
TAGATGTCAATGTCCATCCGTCGAAGCTTGAAGTCCGCCTCAGCAAAGAGACGGAACTGCATGAGCTGATCCGTGACGGC
ATAAAGGAAGTCTTTCAAAAGCAGCGGCTTATTCCGAGCGCCCAGCTTCCGAAAAAATCAGCGCCGGCACCCATCAAAAA
TGAACAGCAATTTATGACGTTCGGTGAAAGTGCGCCTGAGCGGAAACTGCCTGAAAAAACGCCTGAGCCGTCTTACTCAC
CGATGAAGCTGAGTTCGGTCGTAAAAGAGCCGGCGCCGGTAACAGAAGAAGAGTTTCAACCAAATGAAGCGGTTCATGAA
GTGCCGCCGGAGACCAGCGTGCCGGAAACGGCTGCGCCTGTTTCTGATATTTTGTCGCCGGAAGAGGAAGCTGTCTCCGA
AGAAATCCAGGAAGAAAGAGTTCCGGTCATGTATCCGATCGGCCAAATGCACGGGACATATATTTTAGCCCAAAATGAAA
ACGGCCTTTATATCATTGACCAGCATGCGGCCCAAGAGCGGATTAAATACGAATATTTCCGGGAAAAAGTCGGGCAGGTT
GAGCCTGAAGTGCAGGATATGATCGTGCCGCTCACCTTTCACTATGCGGCAAATGAAGCGCTTATCATTGAACAGCATCA
GCATGAGCTTGAAAGTGTAGGAGTATTTTTAGAAGCTTTCGGCACTAACAGCTATATCGTCCGCTGCCATCCGGCCTGGT
TTCCAAAAGGGGAAGAAGCTGAACTGATTGAAGAAATCATTCAGCAGGTGCTTGACGCCAAACAGATCGACATTAAAAAA
CTGCGGGAGGAAGCCGCCATAATGATGAGCTGCAAAGGCTCAATCAAAGCGAACCGTCATTTGCGCAACGACGAAATCAA
AGCGCTCTTGGACGATCTGCGCCGAACGGCAGACCCGTTCACATGCCCGCACGGCCGGCCGATCATTATTCACCATAGCA
CGTATGAGATGGAAAAGATGTTTAAGCGCGTGATGTAG

Domains

Predicted by InterProScan.

MutL C terminal dimerisation domain (MutL_C)

(440-581)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-85)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(209-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

46.213

100

0.478