Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   D2M30_RS08650 Genome accession   NZ_CP032146
Coordinates   1702935..1703366 (+) Length   143 a.a.
NCBI ID   WP_045506081.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1697935..1708366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS08630 (D2M30_08645) spoVS 1698507..1698767 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  D2M30_RS08635 (D2M30_08650) tdh 1699023..1700069 (+) 1047 WP_125122622.1 L-threonine 3-dehydrogenase -
  D2M30_RS08640 (D2M30_08655) - 1700085..1701260 (+) 1176 WP_065521262.1 glycine C-acetyltransferase -
  D2M30_RS08645 (D2M30_08660) miaB 1701403..1702932 (+) 1530 WP_007611533.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  D2M30_RS08650 (D2M30_08665) ymcA 1702935..1703366 (+) 432 WP_045506081.1 RicAFT regulatory complex protein RicA family protein Regulator
  D2M30_RS08655 (D2M30_08670) cotE 1703620..1704165 (+) 546 WP_013352324.1 outer spore coat protein CotE -
  D2M30_RS08660 (D2M30_08675) hexA 1704281..1706866 (+) 2586 WP_125123604.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16114.26 Da        Isoelectric Point: 5.0213

>NTDB_id=274827 D2M30_RS08650 WP_045506081.1 1702935..1703366(+) (ymcA) [Bacillus amyloliquefaciens strain YP6]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSVIINQIKALQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSF

Nucleotide


Download         Length: 432 bp        

>NTDB_id=274827 D2M30_RS08650 WP_045506081.1 1702935..1703366(+) (ymcA) [Bacillus amyloliquefaciens strain YP6]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCCAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAATGAAAATGAAAAAGTCTCTGTGATTATTAATCAGATTAAAGCCTTGCAAA
AGCAAGCCGTTAACCTGAAGCATTACGAAAAGCTTGAAGCTTTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTTAATGACCTTCTTCAGCTTGTCGCTCA
TACGATTTCCAATCAGGTGACAAATGAAATCATTACGTCTACCGGCGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCCTTTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

92.308

100

0.923

Multiple sequence alignment