Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   C5I45_RS07730 Genome accession   NZ_CP027061
Coordinates   1466249..1466584 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus sp. ZY-1-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1461249..1471584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5I45_RS07680 (C5I45_07670) comGC 1461441..1461749 (+) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  C5I45_RS07685 (C5I45_07675) comGD 1461739..1462176 (+) 438 WP_025852922.1 competence type IV pilus minor pilin ComGD Machinery gene
  C5I45_RS07690 (C5I45_07680) comGE 1462160..1462474 (+) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  C5I45_RS07695 (C5I45_07685) comGF 1462383..1462883 (+) 501 WP_226565836.1 competence type IV pilus minor pilin ComGF -
  C5I45_RS07700 (C5I45_07690) comGG 1462884..1463261 (+) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  C5I45_RS07705 (C5I45_07695) - 1463318..1463497 (+) 180 WP_003153093.1 YqzE family protein -
  C5I45_RS07710 (C5I45_07700) - 1463537..1463866 (-) 330 WP_003153097.1 DUF3889 domain-containing protein -
  C5I45_RS07715 (C5I45_07705) tapA 1464125..1464796 (+) 672 WP_014305409.1 amyloid fiber anchoring/assembly protein TapA -
  C5I45_RS07720 (C5I45_07710) - 1464768..1465352 (+) 585 WP_025852917.1 signal peptidase I -
  C5I45_RS07725 (C5I45_07715) - 1465416..1466201 (+) 786 WP_003153102.1 TasA family protein -
  C5I45_RS07730 (C5I45_07720) sinR 1466249..1466584 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  C5I45_RS07735 (C5I45_07725) sinI 1466618..1466791 (-) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  C5I45_RS07740 (C5I45_07730) - 1466968..1467762 (-) 795 WP_014305407.1 YqhG family protein -
  C5I45_RS07745 (C5I45_07735) - 1467780..1469450 (-) 1671 WP_003153107.1 SNF2-related protein -
  C5I45_RS07750 (C5I45_07740) gcvT 1469873..1470973 (+) 1101 WP_003153108.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=274812 C5I45_RS07730 WP_003153104.1 1466249..1466584(-) (sinR) [Bacillus sp. ZY-1-1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=274812 C5I45_RS07730 WP_003153104.1 1466249..1466584(-) (sinR) [Bacillus sp. ZY-1-1]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment