Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   C5I45_RS02725 Genome accession   NZ_CP027061
Coordinates   529510..530199 (+) Length   229 a.a.
NCBI ID   WP_196769287.1    Uniprot ID   -
Organism   Bacillus sp. ZY-1-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 524510..535199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5I45_RS02700 (C5I45_02700) degS 524794..525957 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  C5I45_RS02705 (C5I45_02705) degU 526034..526723 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C5I45_RS02710 (C5I45_02710) - 526821..527669 (+) 849 WP_003151387.1 DegV family protein -
  C5I45_RS02715 (C5I45_02715) comFA 527777..529162 (+) 1386 WP_043867470.1 DEAD/DEAH box helicase Machinery gene
  C5I45_RS02720 (C5I45_02720) - 529220..529504 (+) 285 WP_003151389.1 competence protein ComFB -
  C5I45_RS02725 (C5I45_02725) comFC 529510..530199 (+) 690 WP_196769287.1 phosphoribosyltransferase family protein Machinery gene
  C5I45_RS02730 (C5I45_02730) - 530273..530692 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  C5I45_RS02735 (C5I45_02735) flgM 530762..531028 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  C5I45_RS02740 (C5I45_02740) - 531043..531525 (+) 483 WP_003151394.1 flagellar protein FlgN -
  C5I45_RS02745 (C5I45_02745) flgK 531541..533058 (+) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  C5I45_RS02750 (C5I45_02750) flgL 533070..533987 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  C5I45_RS02755 (C5I45_02755) - 534078..534647 (+) 570 WP_007407476.1 DUF6470 family protein -
  C5I45_RS02760 (C5I45_02760) fliW 534677..535108 (+) 432 WP_003151399.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25265.91 Da        Isoelectric Point: 8.4880

>NTDB_id=274788 C5I45_RS02725 WP_196769287.1 529510..530199(+) (comFC) [Bacillus sp. ZY-1-1]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGSVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKSAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=274788 C5I45_RS02725 WP_196769287.1 529510..530199(+) (comFC) [Bacillus sp. ZY-1-1]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCTCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAATCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(143-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment