Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C5I45_RS02705 Genome accession   NZ_CP027061
Coordinates   526034..526723 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. ZY-1-1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 521034..531723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5I45_RS02685 (C5I45_02685) - 521539..522615 (+) 1077 WP_003151382.1 MraY family glycosyltransferase -
  C5I45_RS02690 (C5I45_02690) - 522705..523919 (-) 1215 WP_107994213.1 LCP family protein -
  C5I45_RS02695 (C5I45_02695) - 523924..524571 (-) 648 WP_003151384.1 YigZ family protein -
  C5I45_RS02700 (C5I45_02700) degS 524794..525957 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  C5I45_RS02705 (C5I45_02705) degU 526034..526723 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C5I45_RS02710 (C5I45_02710) - 526821..527669 (+) 849 WP_003151387.1 DegV family protein -
  C5I45_RS02715 (C5I45_02715) comFA 527777..529162 (+) 1386 WP_043867470.1 DEAD/DEAH box helicase Machinery gene
  C5I45_RS02720 (C5I45_02720) - 529220..529504 (+) 285 WP_003151389.1 competence protein ComFB -
  C5I45_RS02725 (C5I45_02725) comFC 529510..530199 (+) 690 WP_196769287.1 phosphoribosyltransferase family protein Machinery gene
  C5I45_RS02730 (C5I45_02730) - 530273..530692 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  C5I45_RS02735 (C5I45_02735) flgM 530762..531028 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  C5I45_RS02740 (C5I45_02740) - 531043..531525 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=274786 C5I45_RS02705 WP_003219701.1 526034..526723(+) (degU) [Bacillus sp. ZY-1-1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=274786 C5I45_RS02705 WP_003219701.1 526034..526723(+) (degU) [Bacillus sp. ZY-1-1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment