Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C5Y82_RS14795 Genome accession   NZ_CP027034
Coordinates   2866109..2866750 (-) Length   213 a.a.
NCBI ID   WP_003213500.1    Uniprot ID   A0AB34QVB6
Organism   Bacillus pumilus strain 150a     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2861109..2871750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y82_RS14760 (C5Y82_14760) - 2862241..2862672 (+) 432 WP_012011101.1 Na(+)/H(+) antiporter subunit B -
  C5Y82_RS14765 (C5Y82_14765) - 2862672..2863013 (+) 342 WP_012011102.1 Na(+)/H(+) antiporter subunit C -
  C5Y82_RS14770 (C5Y82_14770) - 2863006..2864484 (+) 1479 WP_041815889.1 Na+/H+ antiporter subunit D -
  C5Y82_RS14775 (C5Y82_14775) - 2864491..2864970 (+) 480 WP_012011104.1 Na+/H+ antiporter subunit E -
  C5Y82_RS14780 (C5Y82_14780) - 2864970..2865251 (+) 282 WP_012011105.1 Na(+)/H(+) antiporter subunit F1 -
  C5Y82_RS14785 (C5Y82_14785) mnhG 2865235..2865609 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  C5Y82_RS14790 (C5Y82_14790) - 2865696..2866085 (-) 390 WP_003213775.1 hotdog fold thioesterase -
  C5Y82_RS14795 (C5Y82_14795) comA 2866109..2866750 (-) 642 WP_003213500.1 response regulator transcription factor Regulator
  C5Y82_RS14800 (C5Y82_14800) comP 2866831..2869137 (-) 2307 WP_012011106.1 ATP-binding protein Regulator
  C5Y82_RS14805 (C5Y82_14805) comX 2869151..2869330 (-) 180 WP_313960228.1 competence pheromone ComX -
  C5Y82_RS14810 (C5Y82_14810) - 2869299..2870222 (-) 924 WP_012011108.1 polyprenyl synthetase family protein -
  C5Y82_RS14815 (C5Y82_14815) degQ 2870374..2870514 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  C5Y82_RS14820 (C5Y82_14820) - 2871020..2871373 (+) 354 WP_012011109.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24155.54 Da        Isoelectric Point: 4.5204

>NTDB_id=274664 C5Y82_RS14795 WP_003213500.1 2866109..2866750(-) (comA) [Bacillus pumilus strain 150a]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQETDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=274664 C5Y82_RS14795 WP_003213500.1 2866109..2866750(-) (comA) [Bacillus pumilus strain 150a]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATTTTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACAAGTGAAAATCATC
ATTTATACAGGGTATGAAGTTGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGGAGACCGATCACGAGTTGTTAACAGAGCGAGAGTGTCTCATC
CTGAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCTGACGTGCTACATTTGAGCAAACGCTCGATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.028

100

0.714

Multiple sequence alignment