Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D3C65_RS28920 Genome accession   NZ_CP032126
Coordinates   6108060..6108734 (-) Length   224 a.a.
NCBI ID   WP_003114357.1    Uniprot ID   Q9HTN5
Organism   Pseudomonas aeruginosa strain PAO1161     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6103060..6113734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3C65_RS28890 (D3C65_28855) - 6103234..6104568 (+) 1335 WP_010895702.1 aspartate aminotransferase family protein -
  D3C65_RS28895 (D3C65_28860) - 6104633..6104995 (+) 363 WP_003096551.1 cupin domain-containing protein -
  D3C65_RS28900 (D3C65_28865) rpmG 6105130..6105285 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  D3C65_RS28905 (D3C65_28870) rpmB 6105297..6105533 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  D3C65_RS28910 (D3C65_28875) - 6105889..6107469 (+) 1581 WP_003098288.1 ABC transporter substrate-binding protein -
  D3C65_RS28915 (D3C65_28880) - 6107495..6108043 (+) 549 WP_003098290.1 hypothetical protein -
  D3C65_RS28920 (D3C65_28885) radC 6108060..6108734 (-) 675 WP_003114357.1 RadC family protein Machinery gene
  D3C65_RS28925 (D3C65_28890) coaBC 6108874..6110082 (+) 1209 WP_003114358.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  D3C65_RS28930 (D3C65_28895) dut 6110090..6110545 (+) 456 WP_003098293.1 dUTP diphosphatase -
  D3C65_RS28935 (D3C65_28900) - 6110582..6113188 (+) 2607 WP_003114359.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24934.68 Da        Isoelectric Point: 7.2089

>NTDB_id=274660 D3C65_RS28920 WP_003114357.1 6108060..6108734(-) (radC) [Pseudomonas aeruginosa strain PAO1161]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLSFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=274660 D3C65_RS28920 WP_003114357.1 6108060..6108734(-) (radC) [Pseudomonas aeruginosa strain PAO1161]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGTAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGTCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCCTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HTN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397