Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   NMCC_RS06100 Genome accession   NC_010120
Coordinates   1147571..1148248 (-) Length   225 a.a.
NCBI ID   WP_002222553.1    Uniprot ID   Q9JU84
Organism   Neisseria meningitidis 053442     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1142571..1153248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMCC_RS06085 (NMCC_1154) hflX 1144157..1145335 (-) 1179 WP_012221694.1 GTPase HflX -
  NMCC_RS06090 (NMCC_1155) - 1145340..1146620 (-) 1281 WP_002225276.1 CAP domain-containing protein -
  NMCC_RS15165 - 1146622..1146750 (+) 129 WP_009347251.1 hypothetical protein -
  NMCC_RS06095 (NMCC_1156) - 1146773..1147498 (-) 726 WP_002213448.1 epoxyqueuosine reductase QueH -
  NMCC_RS06100 (NMCC_1157) ysxA/radC 1147571..1148248 (-) 678 WP_002222553.1 RadC family protein Machinery gene
  NMCC_RS06105 (NMCC_1158) gshA 1148371..1149720 (-) 1350 WP_017628985.1 glutamate--cysteine ligase -
  NMCC_RS06110 (NMCC_1159) leuC 1149980..1151389 (+) 1410 WP_012221696.1 3-isopropylmalate dehydratase large subunit -
  NMCC_RS06115 (NMCC_1160) - 1151486..1151740 (+) 255 WP_012221697.1 hypothetical protein -
  NMCC_RS06120 (NMCC_1161) leuD 1151802..1152443 (+) 642 WP_002234920.1 3-isopropylmalate dehydratase small subunit -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24990.83 Da        Isoelectric Point: 5.7262

>NTDB_id=27457 NMCC_RS06100 WP_002222553.1 1147571..1148248(-) (ysxA/radC) [Neisseria meningitidis 053442]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGMGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVRELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=27457 NMCC_RS06100 WP_002222553.1 1147571..1148248(-) (ysxA/radC) [Neisseria meningitidis 053442]
ATGAGCATCAAGCAATGGCCGGAGGGGGAAAGGCCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCTTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGATGGGGACGGCAAGTTTCACA
CAGTTTGCCGTAGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACGGTGGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAGAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCATTGGACGAATATGCCGACAGCCTGATTATTGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTAACGGCGCAAA
CCGTCCGTTCGTTCAGGCAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-78)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JU84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.158

100

0.387
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378

Multiple sequence alignment