Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   D2195_RS06365 Genome accession   NZ_CP032078
Coordinates   1311033..1311770 (-) Length   245 a.a.
NCBI ID   WP_212408128.1    Uniprot ID   -
Organism   Escherichia coli strain CT30     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1306033..1316770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2195_RS06340 (D2195_06820) tyrA 1306406..1307527 (+) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  D2195_RS06345 (D2195_06825) pheA 1307570..1308730 (-) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  D2195_RS06350 (D2195_06830) pheL 1308829..1308876 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  D2195_RS06355 (D2195_06835) raiA 1308980..1309321 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  D2195_RS06360 (D2195_06845) insG 1309582..1310929 (-) 1348 Protein_1258 IS4-like element IS4 family transposase -
  D2195_RS06365 (D2195_06850) comL 1311033..1311770 (-) 738 WP_212408128.1 outer membrane protein assembly factor BamD Machinery gene
  D2195_RS06370 (D2195_06855) rluD 1311905..1312885 (+) 981 WP_000079108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  D2195_RS06375 (D2195_06860) yfiH 1312882..1313613 (+) 732 WP_000040126.1 purine nucleoside phosphorylase YfiH -
  D2195_RS06380 (D2195_06865) clpC 1313743..1316316 (+) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27869.40 Da        Isoelectric Point: 5.8500

>NTDB_id=274426 D2195_RS06365 WP_212408128.1 1311033..1311770(-) (comL) [Escherichia coli strain CT30]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEDMLRDYPDTQATRDALPLMENAYRQMQLNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=274426 D2195_RS06365 WP_212408128.1 1311033..1311770(-) (comL) [Escherichia coli strain CT30]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGACATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGTTGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

39.167

97.959

0.384