Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   D2E16_RS11700 Genome accession   NZ_CP032064
Coordinates   2415887..2416465 (-) Length   192 a.a.
NCBI ID   WP_192369100.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 2410887..2421465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS12585 - 2413185..2413649 (-) 465 WP_321189645.1 YSIRK-type signal peptide-containing protein -
  D2E16_RS11690 (D2E16_12070) - 2413935..2414876 (-) 942 WP_002939863.1 LacI family DNA-binding transcriptional regulator -
  D2E16_RS11695 (D2E16_12075) - 2415241..2415504 (-) 264 Protein_2275 amino acid ABC transporter ATP-binding protein -
  D2E16_RS11700 (D2E16_12080) lytF 2415887..2416465 (-) 579 WP_192369100.1 CHAP domain-containing protein Regulator
  D2E16_RS11705 (D2E16_12085) leuS 2416730..2419231 (-) 2502 WP_192369099.1 leucine--tRNA ligase -
  D2E16_RS11710 (D2E16_12090) - 2419369..2420211 (-) 843 WP_015647525.1 patatin family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20140.75 Da        Isoelectric Point: 6.4608

>NTDB_id=274228 D2E16_RS11700 WP_192369100.1 2415887..2416465(-) (lytF) [Streptococcus suis strain YSJ17]
MSYQMIKKQFKLGLFTALIGNLLWFGMVNVSADDTVISDSPTVSALTKKVEAAKKAAKAAAAAKAALATNMVSEVAAEYT
ANTYPAGQCTWGAKEMAPWVGNYWGNGGDWAASATALGYEVGTIPKVGAIAVWTDGGYGHVAYVTDVAANGHIQVKESNY
GGVYYPSNVRGFFDPTTTSEGTVSYIYPPAGV

Nucleotide


Download         Length: 579 bp        

>NTDB_id=274228 D2E16_RS11700 WP_192369100.1 2415887..2416465(-) (lytF) [Streptococcus suis strain YSJ17]
ATGAGTTATCAAATGATAAAAAAACAATTCAAATTGGGACTGTTTACAGCCCTCATAGGAAATCTTTTATGGTTCGGAAT
GGTGAATGTCAGTGCAGATGACACAGTTATAAGCGATAGTCCGACAGTATCAGCGTTAACAAAAAAGGTTGAAGCTGCAA
AAAAAGCAGCCAAAGCTGCTGCCGCTGCAAAGGCTGCTTTGGCTACCAATATGGTGTCAGAGGTTGCTGCGGAATATACG
GCTAATACCTATCCAGCTGGTCAGTGTACTTGGGGTGCCAAAGAAATGGCTCCTTGGGTTGGAAACTATTGGGGTAATGG
TGGAGATTGGGCAGCTAGTGCGACAGCGCTTGGATATGAAGTGGGAACTATTCCAAAAGTTGGCGCTATTGCTGTATGGA
CAGATGGAGGCTACGGTCATGTTGCCTATGTAACAGATGTGGCAGCTAACGGTCACATTCAAGTTAAGGAATCAAACTAT
GGTGGAGTATACTACCCAAGTAATGTCCGAGGTTTCTTTGATCCAACAACGACTAGCGAAGGAACAGTCAGCTATATTTA
CCCACCAGCTGGAGTATAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(81-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

65.741

56.25

0.37
  lytF Streptococcus gordonii str. Challis substr. CH1

65.741

56.25

0.37